[galaxy-dev] [hg] galaxy 2798: Fix limiting species in interval2maf tool.

details: http://www.bx.psu.edu/hg/galaxy/rev/ff37fcf14bd5 changeset: 2798:ff37fcf14bd5 user: Dan Blankenberg <dan@bx.psu.edu> date: Tue Sep 29 21:47:59 2009 -0400 description: Fix limiting species in interval2maf tool. 3 file(s) affected in this change: test-data/interval2maf_3from28way.maf tools/maf/interval2maf.py tools/maf/interval2maf.xml diffs (1344 lines): diff -r e7b9d15e8e93 -r ff37fcf14bd5 test-data/interval2maf_3from28way.maf --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/interval2maf_3from28way.maf Tue Sep 29 21:47:59 2009 -0400 @@ -0,0 +1,1301 @@ +##maf version=1 +a score=378218.0 +s hg18.chr1 99287304 223 - 247249719 TCCTCTATGCAAGAGTACACTAGCTATTCTGTGGACAGGAGCCAGACAATGTGAGCTGTACATAAGAATTATTTTTGCAGTGTCAAAAGCCATTCTAGGTGGAATCCAAATCACCACTTGCCTTAGACAGACACCCCCTCAGCTTCACTGCAGGTCCAGAGTCAGCCGAGGCCAGAGAGAGAACCACCAGGAGTGGAAGCAACACTCTCTAGGTTCTCTGCAC +s panTro2.chr1 101234886 223 - 229974691 TCCTCTATGCAAGAGTACACTAGCTATTCTATGGACAGGAGCCAGACAATGTGAGCTGTACATAAGAATTATTTTTGCAGTGTCAAAAGCCATTCTAGGTGGAATCCAAATCACCACTTGCCTTAGACAGACACCCCCTCAGCTTCACTGCAGGTCCAGAGTCAGCCGAGGCCACAGAGAGAACCACCAGGAGTGGAAGCAACACTCTCTAGGTTCTCTGCAC + +a score=10640.0 +s hg18.chr1 99287270 34 - 247249719 GCTGTAAGATGCCATGTATTTTGTGATTCTACAA +s panTro2.chr1 101234852 34 - 229974691 GCTGTAAGATGCCATGTATTTTGTGATTCTACAA + +a score=43023.0 +s hg18.chr1 99287229 41 - 247249719 AGGGCCCAGAGGATCTGGCCATGTTCTCATGGCATCATTGA +s panTro2.chr1 101234811 41 - 229974691 AGGGCCCAGAGGATCTGGCCATGTTCTCATGGCATCATTGA + +a score=120618.0 +s hg18.chr1 99287139 90 - 247249719 TCCTTGAAAGGGAAAGACTCTAAAACTTTTCTCTGAATTATGGCCCTGCCACCCCAGCTGGGTTTTTCTCTCAAAGGGAGACAGTAATGA +s panTro2.chr1 101234721 90 - 229974691 TCCTTGAAAGGGAAAGACTCTAAAACTTTTCTCTGAATTACGGCCCTGCCACCCCAGCTGGGTTTTTCTCTCAAAGGGAGACAGTAATGA + +a score=39239.0 +s hg18.chr1 147984545 50 + 247249719 AGAAAAACTTTAGTGGAAACAACCAGTACTTAAAGACCATTTTATGAGGC +s panTro2.chr1 128764240 50 + 229974691 AGAAAAACTTTAGTGGAAACAACCAGTACTTAAAGACCATTTTATGAGGC +i panTro2.chr1 C 0 C 0 + +a score=93901.0 +s hg18.chr1 147984595 35 + 247249719 TGTCATTTACGTATTATCTCTTTTGCTGTTTTTGT +s panTro2.chr1 128764290 35 + 229974691 TGTCATTTACATATTATCTCTTTTGCTGTTTTTGT +i panTro2.chr1 C 0 C 0 + +a score=-5867.0 +s hg18.chr1 99171300 19 - 247249719 CGTGGGGAGAACTGCGCTG +s panTro2.chr1 101114588 19 - 229974691 CGGGGGGAGAACTGCGCTG + +a score=-4312.0 +s hg18.chr1 99171258 42 - 247249719 GGGAAATGACCACCTCGGCCTCGCCGGGGTTCTGCGGACAAA +s panTro2.chr1 101114546 42 - 229974691 GGGAAATGACCACCTCGGCCTCGCCGGGGTTCTGCGGGCAAA + +a score=-5717.0 +s hg18.chr1 99171247 11 - 247249719 CCGGCTAGGGA +s panTro2.chr1 101114535 11 - 229974691 CCGGCTAGGGA + +a score=-26975.0 +s hg18.chr1 99171193 54 - 247249719 GAGCGCCACACGCCCGTGCTTCGCGCCCAAACCGGCCTCACCCGGCGCGGCCAT +s panTro2.chr1 101114481 54 - 229974691 GAGCGCCACACGCCCGTGCTTCGCGCCCAAACCGGCCTCACCCGGCGCGGCCAT + +a score=-60785.0 +s hg18.chr1 99171137 56 - 247249719 ACTAGGGGGACGCTCAGGGCTCGCGGTCCTGAGCGCGGCTGGCCTTTGCGGAAGTG +s panTro2.chr1 101114425 56 - 229974691 ACTAGGGGGACGCTCAGGGCTCGCGGTCCTGAGCGCGGCTGGCCTTTGCGGAAGTG + +a score=151634.0 +s hg18.chr1 148185136 140 + 247249719 acgtctgtaatcccagctactcgtgaggctgatgcaggagaatcacttgaacctgggaagtggaggttgctgtgagccaagattgtgccactgcatttcagcctggctgacagagcaagacttcctctgaaaaaaaaaaa +s panTro2.chr1 128947445 139 + 229974691 acgtctgtaatcccagctactcgtgaggctaatgcaggagaatcacttgaacctgggaagtggaggttgctgtgagccaagattgtgccactgcatttcagcctgggtgacagagcaagacttcctctg-gaaaaaaaaa +i panTro2.chr1 C 0 C 0 + +a score=518150.0 +s hg18.chr10 80123058 56 - 135374737 ACAATATTGTCGAGGGAACTGAAAAACAATCTCACAGTCAATCTACTTCACTGTAA +s mm8.chr10 74075614 56 + 129959148 TTAGAGTTGTTGAGGGAATTGACGTGCAACCTCACAGTCAATCAACATCTTTGTAA +s panTro2.chr10 82310642 56 - 135001995 ACAATATTGTCGAGGGAACTGAAAAACAATCTCACAGTCAATCTACTTCACTGTAA + +a score=200210.0 +s hg18.chr10 80122998 60 - 135374737 TGTGCCCTTCAGAAGTAACAAATATGGAAATCACATCTGAACAAAACAAGGGGAGTTTGA +s panTro2.chr10 82310582 60 - 135001995 TGTGCCCTTCGGAAGTAACAAATATGGAAATCACATTTGAACAAAACAAGGAGAATTTGA +s mm8.chr10 74075554 60 + 129959148 TTTGCCCTGCAGAGAAAACAGGCATGAAAATCACACATGACCAGAGCCAGGAAACGTTGG + +a score=136193.0 +s hg18.chr10 80122957 41 - 135374737 AAAAAACTATCTACGCACAAATGTTTCAGAACTTCAAACTA +s panTro2.chr10 82310541 41 - 135001995 AAAAAACTATCTACGCACAAATGTTTCAGAACTTCAAACTA +s mm8.chr10 74075513 41 + 129959148 AAAAAACTGCCCACCTGCAGATCCCTCAAAACTACACACGT + +a score=1023171.0 +s hg18.chr10 80122882 75 - 135374737 AAAAGGCATCCTCAGACACGTTAAAAACTTAGCAGAACTTGAAAAATCAGTAGCTAACATGTACAGTCAAATAGA +s panTro2.chr10 82310466 75 - 135001995 AAAAGGCATCCTCAGACATGTTAAAAACTTAGCAGAACTTGAAAAATCAGTAGCTAACATGTACAGTCAAATAGA +s mm8.chr10 74075438 75 + 129959148 AAAAGGGATCCTCAGACATGTGAAAAACTTGGCAGAGCTCGAGAAATCAGTGTCTAACATGTACAGTCACATAGA + +a score=-29743.0 +s hg18.chr10 80122851 31 - 135374737 CAGTGTGTAAAACAGACCCTCAGAGAGAACC +s panTro2.chr10 82310435 31 - 135001995 CAGTGTGTAAAACAGACCCTCAGAGAGAACC +s mm8.chr10 74075407 31 + 129959148 CGCAGTGGGGGGCAGAACCCCACAGACATCC + +a score=121521.0 +s hg18.chr10 80122808 43 - 135374737 GCCGAGAAAATTAAGTCCTCTATGACACAGCTATCAACAACGA +s panTro2.chr10 82310392 43 - 135001995 GCCGAGAAAATTAAGTCCTCTATGACACAGCTATCAACAACGA +s mm8.chr10 74075364 40 + 129959148 GCCAGAGAAACCA---CGTCTACGACACAGCCACCAGCATCCA + +a score=101339.0 +s hg18.chr10 80122748 60 - 135374737 TTTCTGTCCACAGAGTGTGTCTGTATAACAGGTGTTAAATGCACGACCAACTTGATGCCT +s panTro2.chr10 82310332 60 - 135001995 TTTCTGTCCACAGAGTGTGTCTGTATAACAGGTGTTGAATGCACGACCAACATGATGCCT +s mm8.chr10 74075304 60 + 129959148 ATTCCATCCACAGACAGCATCTCTGCACCAGCTGCTAAATGCACTGCCAGTGCCACACAC + +a score=153575.0 +s hg18.chr10 80122616 132 - 135374737 cctcctcctACATTTTTTCCACTTTCCGTTTCAACGTCTGGTCCCCCAACA------------ccacctcttctacctccatttccaactcctcttcctccaccacctccttctattccttgccctccacctccttcAGCTTCA +s panTro2.chr10 82310207 125 - 135001995 -------ctACATTTTTTCCACTTTCCATTTCAACGTCTGGTCCCCCAACA------------ccacctcttctacctccatttccaactcctcttcctccaccacctccttctattccttgccctccacctccttcAGCTTCA +s mm8.chr10 74075167 137 + 129959148 ----ccccacaacttgttacattttctcttcccatttctacaccccctacttcttctctacctcttcctcctccactgtcacttcctcctc---ctcctcGGCCACCAGCTCCCCGCCTCTTCCCACAGCCTCCTTCCACGTCC + +a score=-80842.0 +s hg18.chr10 80122576 40 - 135374737 ttgtcctcctccctctcctccttctatccctcttcctctt +s panTro2.chr10 82310184 23 - 135001995 ttgtcctcctccctctcctcctt----------------- +s mm8.chr10 74075144 23 + 129959148 cctttctccccctaaccctcctc----------------- + +a score=15475.0 +s hg18.chr10 80122507 69 - 135374737 tcctccttctcctcctcctgctcctgctcctcttgctcctcctcctgacatttctcctttttctctttt +s mm8.chr10 74075096 48 + 129959148 tccgcctcttcctagacct---------------------cccattgcctttaccacttttcctcttcc +s panTro2.chr10 82310115 69 - 135001995 tcctccttctcctcctcctgctcctgctcctcttgctcctcctcctgacatttctcctttttctctttt + +a score=-32513.0 +s hg18.chr10 80122465 42 - 135374737 CTCTCCTTCTGCCTGtccccttccccctcctcctcctatttc +s mm8.chr10 74075078 18 + 129959148 CTC------------------------TGctcccctcccaca +s panTro2.chr10 82310073 42 - 135001995 CTCTCCTTCTGCCTGtccccttcctcctccttctcctatttc + +a score=286554.0 +s hg18.chr10 80122411 54 - 135374737 ACCTATTGAAACCGAAAGAAATATTTTTGAAAATTTTGCCCATCCACCAAACAT +s panTro2.chr10 82310019 54 - 135001995 ACCTGTTGAAACCGAAAGAAATATGTTTGAAAATTTTGCCCATCCACCAAACAT +s mm8.chr10 74075024 54 + 129959148 AGATACAGAACCAAAAAGGAACTCTTTTGAGATCGCTCCCCATCCACCTAGCAT + +a score=1014462.0 +s hg18.chr10 80122238 173 - 135374737 CCCAGGCCTCACTTCTCATTCTCCACTTTGCCAACTGTTTCAAGAACTGTGGAACTCAAATCAGAACCTAATGTCATCAGTTCTCCTGCTGAGTGTTCCTTGGAACTTTCTCCTT---CAAGGCCTTGTGTTTTACATTCTTCACTCTCTAGGAGAGAGACACCTATTTGTATGTT +s mm8.chr10 74074848 176 + 129959148 TCTTGGTCTCACTTTTCTTTCTCAACTCTGCCAACGATTTCCAGAGCGGTGGAACTCGGGTCGGAACCTAATGTGGTCACTTCTCCCGCTGACTGCACCTTGGAACTTTCTCCTCCTCTGAGACCCCGTATTTTAAACTCCTTAAGCTCTAAGAGAGAGACTCCCACATGTGCATC +s panTro2.chr10 82309846 173 - 135001995 CCCAGGCCTCACTTCTCATTCTCCACTTTGCCAACTGTTTCAAGAACTGTGGAACTCAAATCAGAACCTAATGTCATCAGTTCTCCTGCTGAGTGTTCCTTGGAACTTTCTCCTT---CAAGGCCTTGTGTTTTAAATTCTTCACTCTCTAGGAGAGCGACACCTATTTGTATGTT + +a score=337224.0 +s hg18.chr10 80122083 155 - 135374737 GAATCTGTACAAACAAAAGAGGTAGCAGCAATCCATTGCTTACAACTGAAGAGGCAAATTTGACAGAGAAAGAGGAAATAAGGCAAGGTGAAACACTGATGATAGAAGGAACAGAACAGTTGAAATCTCTCTCTTCAGACTCTTCATTTTGCTTT +s panTro2.chr10 82309691 155 - 135001995 GAATCTGTACAAACAAAAGAGGTAGCAGCAATCCATTGCTTACAACTGAAGAGGCAAATTTGACAGAGAAAGAGGAAATAAGGCAAGGTGACACACTGATTATGAAAGGAAGAGAACAGTTGAAATCTCTCTCTTCAGACTCTTCATTTTGCTTT +s mm8.chr10 74074696 152 + 129959148 GATGCCACCCAAGCCAGAGAGGTAGCAGCAACGTTCTGCTGGCAACTGAAGATGCCCACGAGTCAGAGAA---AGAAGGGGGACACAGAGACACCCTAATCGTCCAGCAAACAGAGCAGCTGAAATCTCTGTCTTCTGGCTCTTCTTTTTCCTCC + +a score=196272.0 +s hg18.chr10 80122035 48 - 135374737 TGCAGCAGTGGCAAGGCACCAGGCAGAAAGCTGAAAATGAAAACACTG +s panTro2.chr10 82309643 48 - 135001995 TGCAGCAGTGGCAAGGCACCAGGCAGAAAGCTGAAAATGAAAACACTG +s mm8.chr10 74074648 48 + 129959148 TGGTGGAGTGGCAGATCACCAATCAGAGAGCTGAATGCGAAAGCGCCA + +a score=267386.0 +s hg18.chr10 80121994 41 - 135374737 GCTGATGAGGAAAGTTCCAAATAGACCAGAGATCATAGATC +s panTro2.chr10 82309602 41 - 135001995 GCTGATGAGGAAAGTTCCAAATAGACCAGAGATCATAGATC +s mm8.chr10 74074607 41 + 129959148 GCTCATGTGGAAAGCCCCAAACAGGCCAGAGACCATAGACC + +a score=799420.0 +s hg18.chr10 80121885 109 - 135374737 ATTTTGTAGACCCATTTTCACCCAAAATACAAGCCAAGAGTAAGTCTCTGAGGGGCCCAAGAGAAAAGATTCAGAGGCTGTGGAGTCAGTCAGTCAGCTTACCCAGGAG +s panTro2.chr10 82309493 109 - 135001995 ATTTTGTAGACCTATTTTCACCCAAAGTACAAGCCAAGAGTAAGTCTCTGAGGGGCCCAAGAGAAAAGATTCAGAGGCTGTGGAGTCAGTCAGTCAGCTTACCCAGGAG +s mm8.chr10 74074498 109 + 129959148 ATTTTGAAGAGCTGTTGGCACCCAGAACACAAGTTAAGAGTCAGTCTCTGAGGGGCCCAAGAGAAAAGATCCAGAGGGTGTGGAATCAGTCTGTGAGCTTTCCTAGGCG + +a score=212883.0 +s hg18.chr10 80121842 43 - 135374737 ATAAGTCAAGTATCAACAAATTCAGACATTTCACAGAGAACAG +s panTro2.chr10 82309450 43 - 135001995 ATAAGTCAAGTATCAACAAATTCAGACATTTCACAGAGAACAG +s mm8.chr10 74074455 43 + 129959148 ATAGGTCAAAGGTCAACAAACTCAGACCTTCAGCCACGAACAG + +a score=804771.0 +s hg18.chr10 80121755 87 - 135374737 AGCAACAAACTGAAGTCTGCAAGAAAATTCACATTTCTATCTGATGAGGATGACTTAAGTGCCCATAATCCCCTTTATAAGGAAAAC +s panTro2.chr10 82309363 87 - 135001995 AGCAACAAACTGAAGGCTGCAAGAAAATTCACATTTCTATCTGATGAGGATGACTTAAGTGCCCATAATCCCCTTTATAAGGAAAAC +s mm8.chr10 74074368 87 + 129959148 GAGAGCCAGCCTAACCCAGCAAGGACGTTCTCATTTGTTCCTGATGAGGATAACTTAAGTACCCATAATCCCCTTTACATGGAAAGT + +a score=2273365.0 +s hg18.chr10 80121613 142 - 135374737 TCTTTTCCTTCTCTACCATTTTCAACAAAGCAGGGGAAATAACTCAGTCTCAGAAGACAGGAAACATCAACAAGTTGTGATGCCCTTTTCTTCCAATACTATTGAGGCTCACAAGTCAGCTCATGTAGACGGATCACTTAAG +s panTro2.chr10 82309221 142 - 135001995 TATTTTCCTTCTCTACCATTTTCAACAAAGCAGGGGAAATAACTCAGTCTCAGAAGACAGGAAACATCAACAAGTTGTGATGCCCTTTTCTTCCAATACTATTGAGGCTCACAAGTCAGCTCATGTAGACGGATCACTTAAG +s mm8.chr10 74074226 142 + 129959148 TCTTTTCCTTCTCTACCATTTTGAACAAAGCAGGGGAAATAACTCAGTCCCAGAAGACAGGAGCAGTCATCGCGATGGGATGGCCTTTTCCTCCAGTACCACTGAGTCTCATGAGCCAGCTCATGTAGAGGGACCACTTAAG + +a score=591281.0 +s hg18.chr11 18327947 30 - 134452384 GCCTACAAATGGAGTGTTGAGGATATGTAA +s mm8.chr9 46049473 30 + 124000669 GCCTACAAGTGGAGTGTGGAGGATATGTGA +s panTro2.chr11 18640018 30 - 134204764 GCCTACAAATGGAGTGTTGAGGATATGTAA + +a score=887677.0 +s hg18.chr11 18327884 63 - 134452384 TCCAATGGATTTGAACAGAAGCGCTTTGCCAGGCTTGCCAGCAAGAAGGCAGTGGAGGAACTT +s panTro2.chr11 18639955 63 - 134204764 TCCAATGGATTTGAACAGAAGCGCTTTGCCAGGCTTGCCAGCAAGAAGGCAGTGGAGGAACTT +s mm8.chr9 46049410 63 + 124000669 TCCAATGGCTTTGAACAGAAGCGCTTTGCCAGGCTCGCCAGCAAGAAGGCTGTGGAGGAGCTT + +a score=63327.0 +s hg18.chr11 18327883 1 - 134452384 A +s panTro2.chr11 18639954 1 - 134204764 A +s mm8.chr9 46049409 1 + 124000669 A + +a score=156152.0 +s hg18.chr11 116206508 6 + 134452384 ATGCAG +s mm8.chr9 78014961 6 - 124000669 ATGCAG +i mm8.chr9 C 0 C 0 +s panTro2.chr11 115648111 6 + 134204764 ATGCAG +i panTro2.chr11 C 0 C 0 + +a score=204572.0 +s hg18.chr11 116206514 49 + 134452384 CCCCGGGTACTCCTTGTTGTTGCCCTCCTGGCGCTCCTGGCCTCTGCCC +s panTro2.chr11 115648117 49 + 134204764 CCCCGGGTACTCCTTGTTGTTGCCCTCCTGGCGCTCCTGGCCTCTGCCC +i panTro2.chr11 C 0 C 0 +s mm8.chr9 78014967 49 - 124000669 CCCCGGACGCTCCTCACTGTGGCCCTCTTGGCTCTCCTGGCATCTGCCC +i mm8.chr9 C 0 C 0 + +a score=27414.0 +s hg18.chr11 18240627 24 - 134452384 ACTAAGAAGCTCAACACCCAGTGA +s panTro2.chr11 18551568 24 - 134204764 ACTAAGAAGCTCAACACCCAGTGA +s mm8.chr9 45981373 24 + 124000669 AGCGAGACTCTGACTGCCCAGTGA + +a score=65817.0 +s hg18.chr11 18240590 37 - 134452384 CTTCAAGGTCAGCTTCCTGAGCGCTCTCGAGGAGTAC +s panTro2.chr11 18551531 37 - 134204764 CTTCAAGGTCAGCTTCCTGAGCGCTCTCGAGGAGTAC +s mm8.chr9 45981336 37 + 124000669 GCTTAAGACCCAAGTCCAGAGTGTGATCGACAAGGCC + +a score=121894.0 +s hg18.chr11 18240544 46 - 134452384 CCGCGCTCGAGGACCTCCGCCAAGGCCTGCTGCCCGTGCTGGAGAG +s mm8.chr9 45981290 46 + 124000669 CTGCGCTGGAGGACCTGCGCCATAGTCTGATGCCCATGCTGGAGAC +s panTro2.chr11 18551485 46 - 134204764 CCGCGCTCGAGGACCTCCGCCAGGGCCTGCTGCCCGTGCTGGAGAG + +a score=368735.0 +s hg18.chr11 18240366 178 - 134452384 GACCGCGCGCGCGCCCATGTGGACGCGCTGCGCACGCATCTGGCCCCCTACAGCGACGAGCTGCGCCAGCGCTTGGCCGCGCGCCTTGAGGCTCTCAAGGAGAACGGCGGCGCCAGACTGGCCGAGTACCACGCCAAGGCCACCGAGCATCTGAGCACGCTCAGCGAGAAGGCCAAGC +s panTro2.chr11 18551307 178 - 134204764 GACCGCGCGCGCGCCCATGTGGACGCGCTGCGCACGCATCTGGCCCCCTACAGCGACGAGCTGCGCCAGCGCTTGGCCGCGCGCCTTGAGGCTCTCAAGGAGAACGGCGGCGCCAGACTGGCCGAGTACCACGCCAAGGCCACCGAGCATCTGAGCACGCTCAGCGAGAAGGCCAAGC +s mm8.chr9 45981118 172 + 124000669 GACCGCATGCGCACACACGTAGACTCTCTGCGCACACAGCTAGCGCCCCACAGCGAACAGATGCGCGAGAGCCTGGCCCAGCGCCTGGCTGAGCTCAAGA------GCAACCCTACCTTGAACGAGTACCACACCAGGGCCAAAACCCACCTGAAGACACTTGGCGAGAAAGCCAGAC + +a score=97575.0 +s hg18.chr11 18240323 43 - 134452384 CGAGCTGCAAGAGAAGCTGAGCCCACTGGGCGAGGAGATGCGC +s panTro2.chr11 18551264 43 - 134204764 CGAGCTGCAAGAGAAGCTGAGCCCACTGGGCGAGGAGATGCGC +s mm8.chr9 45981075 43 + 124000669 GGAGCTGCAAGGGAGACTGTCCCCTGTGGCTGAGGAATTTCGC + +a score=580950.0 +s hg18.chr11 18240123 200 - 134452384 CAGGAGTTCTGGGATAACCTGGAAAAGGAGACAGAGGGCCTGAGGCAGGAGATGAGCAAGGATCTGGAGGAGGTGAAGGCCAAGGTGCAGCCCTACCTGGACGACTTCCAGAAGAAGTGGCAGGAGGAGATGGAGCTCTACCGCCAGAAGGTGGAGCCGCTGCGCGCAGAGCTCCAAGAGGGCGCGCGCCAGAAGCTGCA +s panTro2.chr11 18551064 200 - 134204764 CAGGAGTTCTGGGATAACCTGGAAAAGGAGACAGAGGGCCTGAGGCAGGAGATGAGCAAGGATCTGGAGGAGGTGAAGGCCAAGGTGCAGCCCTACCTGGACGACTTCCAGAAGAAGTGGCAGGAGGAGATGGAGCTCTACCGCCAGAAGGTGGAGCCGCTGCGCGCCGAGCTCCAAGAGGGCGCGCGCCAGAAGCTGCA +s mm8.chr9 45980875 200 + 124000669 CGGGACTTCTGGGATAACCTGGAGAAAGAAACAGATTGGGTGAGACAGGAGATGAACAAGGACCTAGAGGAAGTGAAACAGAAGGTGCAGCCCTACCTGGACGAATTCCAGAAGAAATGGAAAGAGGATGTGGAGCTCTACCGCCAGAAGGTGGCGCCTCTGGGCGCCGAGCTGCAGGAGAGCGCGCGCCAGAAGCTGCA + +a score=49052.0 +s hg18.chr11 18240102 21 - 134452384 GAACAGCTCGGCCCTGTGACC +s panTro2.chr11 18551043 21 - 134204764 GAACAGCTCGGCCCTGTGACC +s mm8.chr9 45980854 21 + 124000669 GAACGGCTGGGCCCATTGACT + +a score=167437.0 +s hg18.chr11 18240047 55 - 134452384 CCTAAAGCTCCTTGACAACTGGGACAGCGTGACCTCCACCTTCAGCAAGCTGCGC +s panTro2.chr11 18550988 55 - 134204764 CCTAAAGCTCCTTGACAACTGGGACAGCGTGACCTCCACCTTCAGCAAGCTGCGC +s mm8.chr9 45980799 55 + 124000669 CCTGAATCTCCTGGAAAACTGGGACACTCTGGGTTCAACCGTTAGTCAGCTGCAG + +a score=-14919.0 +s hg18.chr11 1812377 30 + 134452384 ATGCTCCACCTGCATGGCTGGCAAACCATG +s mm8.chr7 142247071 26 + 145134094 ----CCAACTGGACTACCGTGTAGAAGATG +i mm8.chr7 C 0 C 0 +s panTro2.chr11 1858435 30 + 134204764 ATGCTCCACCTGTATGGCTGGCAAACCACG +i panTro2.chr11 C 0 C 0 + +a score=117382.0 +s hg18.chr12 93909439 1 - 132349534 A +s panTro2.chr12 50116182 1 + 135371336 A +s mm8.chr15 12392656 1 - 103492577 A + +a score=2422168.0 +s hg18.chr12 93909303 136 - 132349534 AAATTGAATCACTCTTTGACAACAGGCTATGTACATGTGGCACTTCAGATTCTGATGAAGGGAGATATATTGAATATATTCGGGTAAAGGGAAGTAACTATCATCTTTCTGACAATGATGCTTCTGATGTGGAATA +s panTro2.chr12 50116046 136 + 135371336 AAATTGAATCACTCTTTGACAACAGGCTATGTACATGTGGCACTTCAGATTCTGATGAAGGGAGATATATTGAATATATTCGGGTAAAGGGAAGTAACTATCATCTTTCTGACAATGATGCTTCTGATGTGGAATA +s mm8.chr15 12392520 136 - 103492577 AAATCGAATCGCTCTTTGACCACCGGCTATGTTCATGTGGCGCTGCCGACTCGGATGAAGGGAGGTACATTGAGTACATCCGCGTGAAGGGAAGCAACTATCATCTCTCCGACAACGACGCTTCTGACGTGGAGTA + +a score=1478304.0 +s hg18.chr12 93909213 90 - 132349534 GAGCTTTCTTCCTCTATGCTGGATTTGCTGCTGTGGGACTCCTTTTCATCTATGGCTGTCTTCCTGAGACCAAAGGCAAAAAATTAGAGG +s panTro2.chr12 50115956 90 + 135371336 GAGCTTTCTTCCTCTATGCTGGATTTGCTGCTGTGGGACTCCTTTTCGTCTACGGCTGTCTTCCTGAGACCAAAGGCAAAAAATTAGAGG +s mm8.chr15 12392430 90 - 103492577 GAGCATTCTTCCTCTACGCCGGATTCGCCGCTGTGGGACTGCTTTTTGTCTATGGCTGCCTCCCTGAAACCAAGGGGAAAAAATTGGAGG + +a score=129525.0 +s hg18.chr13 112381694 1 + 114142980 A +s panTro2.chr13 114131566 1 + 115868456 A +i panTro2.chr13 C 0 C 0 +s mm8.chr8 12748309 1 + 132085098 A +i mm8.chr8 C 0 C 0 + +a score=39963.0 +s hg18.chr13 112381695 121 + 114142980 TGAACTCACCAGAGGCGAGGCTCTGCGTTGCTCAATGCAGAGACTCTTACCCAGGGTGTCAGCCTCTGAAAGATACACGTGCCTGGGCCTCTTCCCTGAAGATGGACCCGGCAGGTCTGGA +s panTro2.chr13 114131567 121 + 115868456 TGAACTCACCAGAGGCGAGGCTCTGCGTTGCTCAATGCAGAGACTCTTACCCAGGGTGTCAGCCTCTGAAAGATACACGTGCCTGGGCCTCTTCCCTGAAGATGGACCCGGCAGGTCTGGA +i panTro2.chr13 C 0 C 0 +s mm8.chr8 12748310 91 + 132085098 TTTGTTCACCAGAGT----GTCCTGGCCTCCTGCCTATGTGGACTCATTCCCAAGG-ACCAGCCT-TGAAGGACGCA-ATGTAGGG-----CTCCATGGA------------------GGA +i mm8.chr8 C 0 C 0 + +a score=1055.0 +s hg18.chr13 112381816 44 + 114142980 GGGAGGCCCCCGTGATGAATCCCGTGATGAGCCGCCGATCCGAG +s panTro2.chr13 114131688 44 + 115868456 GGGAGGCCCCTGTGATGAATCCCGTGATGAGCCGCTGATCCGAG +i panTro2.chr13 C 0 C 0 +s mm8.chr8 12748401 15 + 132085098 GGGAGGTCTGTGTGA----------------------------- +i mm8.chr8 C 0 C 0 + +a score=-16674.0 +s hg18.chr13 112381860 93 + 114142980 CTCAGGCTGCGTCATGGGACCAGCCACAAGGTTGCCTGACC-TATAAAGGTCGCAGGAGTGCCTCAGGGACACAGAAGCAGTTACAGCTGCCAG +s panTro2.chr13 114131732 93 + 115868456 CTCGGGCTGCGTCATGGGACCAGCCACAAGGTTGCCTGACC-TATAAAGGTCACAGGAGTGCCTCAGGGAGACAGAAGCAGTTACAGCTGTCAG +i panTro2.chr13 C 0 C 0 +s mm8.chr8 12748416 81 + 132085098 -----------CACTGGGACTTGCCACAGGTCAG--TGATTGTTCAGAGGTCACAGGAGTGCCACCCTCAGGCAGAGTCATCTGTCTTTTCCAG +i mm8.chr8 C 0 C 0 + +a score=1627846.0 +s hg18.chr14 7658261 84 - 106368585 ACCCTGGAGAAACACATGAAAAAGTGGCACGGCGAGCACTTGCTGACTAACGACGTCAAAATCGAGCAGGCCGAGAGGAGCTAA +s panTro2.chr14 7807052 84 - 107349158 ACCCTGGAGAAACACATGAAAAAGTGGCACGGCGAGCACTTGCTGACTAACGACGTCAAAATCGAGCAGGCCGAGAGGAGCTAA +s mm8.chr12 12099869 84 - 120463159 ACCCTGGAGAAACACATGAAAAAGTGGCACGGTGAACACTTGCTGACTAATGATGTCAAAATCGAGCAGGCTGAGAGGAGCTAA + +a score=2813413.0 +s hg18.chr14 7658104 157 - 106368585 GCGGAGCCACACCGGCGAGCGGCCTTACAAGTGCGAGCTGTGCAACTACGCGTGCGCGCAGAGCAGCAAGCTCACGCGCCACATGAAGACGCACGGGCAGATCGGCAAGGAGGTGTACCGCTGCGACATCTGCCAGATGCCCTTCAGCGTCTACAGC +s panTro2.chr14 7806895 157 - 107349158 GCGGAGCCACACCGGCGAGCGGCCTTACAAGTGCGAGCTGTGCAACTACGCGTGCGCGCAGAGCAGCAAGCTCACGCGCCACATGAAGACGCACGGGCAGATCGGCAAGGAGGTGTACCGCTGCGACATCTGCCAGATGCCCTTCAGCGTCTACAGC +s mm8.chr12 12099712 157 - 120463159 GAGGAGCCACACCGGCGAGCGGCCTTACAAGTGCGAGCTGTGCAACTACGCGTGCGCGCAGAGCAGCAAGCTCACGCGCCACATGAAGACGCACGGGCAGATCGGCAAGGAGGTGTACCGCTGCGACATCTGCCAGATGCCCTTCAGCGTCTACAGC + +a score=1778334.0 +s hg18.chr14 7657988 116 - 106368585 CCGCACCTgggcggcccgggccccgggcggcccAGCTCCAAGGAGGGCCGCCGCAGCGACACGTGCGAGTACTGCGGCAAGGTGTTCAAGAACTGCAGCAACTTGACGGTGCACCG +s panTro2.chr14 7806779 116 - 107349158 CCGCACCTgggcggcccgggccccgggcggcccAGCTCCAAGGAGGGCCGCCGCAGCGACACGTGCGAGTACTGCGGCAAGGTGTTCAAGAACTGCAGCAACTTGACGGTGCACCG +s mm8.chr12 12099596 116 - 120463159 CCTCACCTGGGTGGTCCGGGTCCTGGGAGGCCGAGCTCCAAGGAGGGCCGCCGCAGCGACACATGTGAGTACTGCGGCAAGGTCTTCAAGAACTGTAGCAACCTGACGGTGCACCG + +a score=448798.0 +s hg18.chr14 7657957 31 - 106368585 CCGCAGCGGCACGGCCAGCGGAGGCAGCACC +s panTro2.chr14 7806748 31 - 107349158 CCGCAGCGGCACGGCCAGCGGGGGCAGCACC +s mm8.chr12 12099565 31 - 120463159 GCGCAGTGGCACGGCGAGCGGGGGCAGCACA + +a score=951272.0 +s hg18.chr14 7657896 61 - 106368585 AGAACGGCAGCCTGCGCTTCTCCACGCCGCCCGGGGACCTGCTGGACGGCGGCCTCTCGGG +s panTro2.chr14 7806687 61 - 107349158 AGAACGGCAGCCTGCGCTTCTCCACGCCGCCCGGGGACCTGCTGGACGGCGGCCTCTCGGG +s mm8.chr12 12099504 61 - 120463159 AGAACGGCAGCCTGCGCTTCTCAACGCCACCCGGGGACCTGCTGGACGGCGGGCTGTCCGG + +a score=2903485.0 +s hg18.chr14 7657646 250 - 106368585 GAGCCCTTCCCCGGGCTCTTCCCGCGCAAGCCCGCGCCGCTGCCCAGCCCCGGGCTCAACAG------------CGCCGCCAAGCGCATCAAGGTGGAGAAGGACCTGGAGCTGCCGCCCGCCGCGCTCATCCCGTCCGAGAACGTGTACTCGCAGTGGCTGGTGGGCTACGCGGCGTCGCGGCACTTCATGAAGGACCCCTTCCTGGGCTTCACGGACGCACGACAGTCGCCCTTCGCCACGTCGTCCGAGCACTCGTCCG +s panTro2.chr14 7806437 250 - 107349158 GAGCCCTTCCCCGGGCTCTTCCCGCGCAAGCCCGCGCCGCTGCCCAGCCCCGGGCTCAACAG------------CTCCGCCAAGCGCATCAAGGTGGAGAAGGACCTGGAGCTGCCGCCCGCCGCGCTCATCCCGTCCGAGAACGTGTACTCGCAGTGGCTGGTGGGCTACGCGGCGTCGCGGCACTTCATGAAGGACCCCTTCCTGGGCTTCACGGACGCACGACAGTCGCCCTTCGCCACGTCGTCCGAGCACTCGTCCG +s mm8.chr12 12099242 262 - 120463159 GAGCCCTTTCCAGCTCTCTTCCCACGCAAGCCAGCACCGCTGCCCAGCCCTGGGCTCGGTGGTCCCGCGCTGCACGCGGCCAAGCGCATCAAGGTGGAGAAAGACCTGGAGCTGCCACCTGCCGCCCTCATCCCATCTGAGAACGTGTACTCGCAGTGGCTCGTGGGCTACGCAGCATCGCGCCACTTCATGAAGGACCCATTCCTGGGCTTCACGGATGCGCGCCAGTCGCCTTTCGCCACATCGTCGGAACATTCCTCTG + +a score=152242.0 +s hg18.chr14 7657593 53 - 106368585 cgggcgcgggcggcgcggtcaacgggcgcgggggcggCTTCGCGCCAGGCACC +s panTro2.chr14 7806384 53 - 107349158 cgggcgcgggcggcgcggtcaacgggcgcgggggcggCTTCGCGCCAGGCACC +s mm8.chr12 12099189 53 - 120463159 CGGGTGCACCGGGTGCAGTGAACGGGCGCGGCGGGGCCTTCGCGCCAGGCGCA + +a score=564664.0 +s hg18.chr14 7657449 144 - 106368585 AGGTCATGGAGAACGTGGGCCTAGGCGCACTGCCGCAGTACGGCGAGCTCCTGGCCGACAAGCAGAAGCGCGGCGCCTTCCTGAAGCGTGCggcgggcggcggggacgcgggc---gacgacgacgacgcgggcggctgcggggacg +s panTro2.chr14 7806240 144 - 107349158 AGGTCATGGAGAACGTGGGCCTAGGCGCACTGCCGCAGTACGGCGAGCTCCTGGCCGACAAGCAGAAGCGCGGCGCCTTCCTGAAGCGTGCggcgggcggcggggacgcgggc---gacgacgacgacgcgggcggctgcggggacg +s mm8.chr12 12099075 114 - 120463159 AGGTGATGGAGGACGCAGGGCTGGGCGCACTGCCGCAGTATGGGGAG------------------AAGCGGGGCGCCTTCCTGAAGCGTGCAGGC---------------GACACGGGTGATGCCGGAGCTGTTGGCTGTGGGGACG + +a score=158337.0 +s hg18.chr14 7657397 52 - 106368585 gggggcggcgcggccAAGGCGCTGGCTGACGAGAAGGCGCTGGTGCTGGGCA +s panTro2.chr14 7806188 52 - 107349158 gggggcggcgcggccAAGGCGCTGGCTGACGAGAAGGCGCTGGTGCTGGGCA +s mm8.chr12 12099026 49 - 120463159 GGGGC---TGCAGCTGCGGCTCTGGCGGATGAGAAGGCTCTGGCCCTGGGCA + +a score=706451.0 +s hg18.chr14 7657293 104 - 106368585 TACTGGAGAACGAGAGCCGGCCCGAGTCGAGCTTCAGCATGGACTCGGAGCTGAGCCGCAACCGCGAGAACGGCGGTGGTGGGGTgcccggggtcccgggcgcg +s panTro2.chr14 7806084 104 - 107349158 TACTGGAGAACGAGAGCCGGCCCGAGTCGAGCTTCAGCATGGACTCGGAGCTGAGCCGCAACCGCGAGAACGGCGGTGGTGGGGTgcccggggtcccgggcgcg +s mm8.chr12 12098922 104 - 120463159 TGCTGGAGAACGAGAGCCGGCCTGAGTCGAGCTTCAGCATGGACTCGGAGCTGGGCCGTGGCCGCGAGAACGGAGGTGGCGTGCCACCGGGGGTGGCGGGCGCA + +a score=424364.0 +s hg18.chr14 7657246 47 - 106368585 GCCggaggaggaggacgaggaggaggaggaggaggaggaggagCTGC +s panTro2.chr14 7806037 47 - 107349158 GCCggaggaggaggacgaggaggaggaggaggaggaggaggagCTGC +s mm8.chr12 12098878 44 - 120463159 GCCTgaggacga---cgaggacgaggaggaggaagaagaggagCTGC + +a score=0.0 +s hg18.chr14 7657213 33 - 106368585 CCACCACGAGAGCGACCCGTCGCTGGGCCACGA + +a score=1620466.0 +s hg18.chr14 7657080 133 - 106368585 TGAAGACGCACATGCACAAGGCCGGCTCGCTGGCCGGCCGCTCCGACGACGGGCTCTCGGCCGCCAGCTCCCCCGAGCCCGGCACCAGCGAGCTGGCGGGCGAGGGCCTCAAGGCGGCCGACGGTGACTTCCG +s panTro2.chr14 7805871 133 - 107349158 TGAAGACGCACATGCACAAGGCCGGCTCGCTGGCCGGCCGCTCCGACGACGGGCTCTCGGCCGCCAGCTCCCCCGAGCCCGGCACCAGCGAGCTGGCGGGCGAGGGCCTCAAGGCGGCCGACGGCGACTTCCG +s mm8.chr12 12098715 130 - 120463159 TGAAGACGCACATGCACAAGGCGGGCTCTCTGGCTGGCCGCTCAGACGACGGGCTCTCAGCTGCCAGCTCCCCTGAGCCGGGCACCAGCGAGCTGCCAGGTGA---CCTGAAAGCGGCCGATGGCGACTTCCG + +a score=1419683.0 +s hg18.chr14 7657003 77 - 106368585 TCACACGGGCGAGAAGCCCTACAAGTGCCAGCTGTGCGACCACGCGTGCTCGCAGGCCAGCAAGCTCAAGCGCCACA +s panTro2.chr14 7805794 77 - 107349158 TCACACGGGCGAGAAGCCCTACAAGTGCCAGCTGTGCGACCACGCGTGCTCGCAGGCCAGCAAGCTCAAGCGCCACA +s mm8.chr12 12098638 77 - 120463159 CCACACGGGCGAGAAGCCCTACAAGTGCCAGCTGTGCGACCATGCGTGCTCGCAGGCGAGCAAGCTCAAGCGCCACA + +a score=2586302.0 +s hg18.chr14 7656851 152 - 106368585 AGCCCCAAGTCCCCGTTCCTGAGCACGCCGCCGCTGCCGCCCATGCCCCCTGGCGGCACGCCGCCCCCGCAGCCGCCAGCCAAGAGCAAGTCGTGCGAGTTCTGCGGCAAGACCTTCAAGTTCCAGAGCAATCTCATCGTGCACCGGCGCAG +s panTro2.chr14 7805642 152 - 107349158 AGCCCCAAGTCCCCGTTCCTGAGCACGCCGCCGCTGCCGCCCATGCCCCCTGGCGGCACGCCGCCCCCGCAGCCGCCGGCCAAGAGCAAGTCGTGCGAGTTCTGCGGCAAGACCTTCAAGTTCCAGAGCAATCTCATCGTGCACCGGCGCAG +s mm8.chr12 12098489 149 - 120463159 AGTCCCAAGTCCCCGTTCCTCAGCACGCCACCGCTGCCACCCATGCCTGCGGGC---ACACCGCCACCGCAGCCGCCTGCCAAGAGCAAGTCCTGTGAGTTCTGCGGCAAGACCTTCAAGTTCCAGAGCAATCTCATCGTGCACCGGCGCAG + +a score=2626021.0 +s hg18.chr14 7656695 156 - 106368585 GACCGAGTCATGCGCCTGAACCCCATGGCCATCGACTCGCCCGCCATGGACTTCTCGCGGCGGCTCCGCGAGCTGGCGGGCAACAGCTCCACGCCGCCGCCCGTGTCCCCGGGCCGCGGCAACCCTATGCACCGGCTCCTGAACCCCTTCCAGCCC +s panTro2.chr14 7805486 156 - 107349158 GACCGAGTCATGCGCCTGAACCCCATGGCCATCGACTCGCCCGCCATGGACTTCTCGCGGCGGCTCCGCGAGCTGGCGGGCAACAGCTCCACGCCGCCGCCCGTGTCCCCGGGCCGCGGCAACCCTATGCACCGGCTCCTGAACCCCTTCCAGCCC +s mm8.chr12 12098333 156 - 120463159 GACCGAGTCATGCGCCTGAACCCCATGGCCATAGACTCTCCTGCCATGGACTTCTCCCGGCGGCTGCGAGAACTGGCCGGCAACAGCTCCACGCCGCCGCCCGTGTCCCCAGGCCGTGGCAACCCTATGCACCGGCTGCTGAACCCTTTCCAGCCC + +a score=2119797.0 +s hg18.chr14 7656589 106 - 106368585 GCCGGGCACGCCGCCTCTCTTCAGTCCCCCGCCGCGCCACCACCTGGACCCGCACCGCCTCAGTGCCGAGGAGATGGGGCTCGTCGCCCAGCACCCCAGTGCCTTC +s panTro2.chr14 7805380 106 - 107349158 GCCGGGCACGCCGCCTCTCTTCAGTCCCCCGCCGCGCCACCACCTGGACCCGCACCGCCTCAGTGCCGAGGAGATGGGGCTCGTCGCCCAGCACCCCAGTGCCTTC +s mm8.chr12 12098227 106 - 120463159 GCCAGGTACGCCACCGCTCTTCAGCCCACCGCCACGCCATCACTTGGACCCACACCGCCTCAGTGCAGAGGAGATGGGGCTCGTGGCCCAGCACCCCAGTGCCTTC + +a score=4942642.0 +s hg18.chr14 7656300 289 - 106368585 GTAAAGATGAGCCTTCCAGCTACATTTGCACAACATGCAAGCAGCCCTTCAACAGCGCGTGGTTCCTGCTGCAGCACGCGCAGAACACGCACGGCTTCCGCATCTACCTGGAGCCCGGGCCGGCCAGCAGCTCGCTCACGCCGCGGCTCACCATCCCGCCGCCGCTCGGGCCGGAGGCCGTGGCGCAGTCCCCGCTCATGAATTTCCTGGGCGACAGCAACCCCTTCAACCTGCTGCGCATGACGGGCCCCATCCTGCGGGACCACCCGGGCTTCGGCGAGGGCCGCCT +s panTro2.chr14 7805091 289 - 107349158 GTAAAGATGAGCCTTCCAGCTACATTTGCACAACATGCAAGCAGCCCTTCAACAGCGCGTGGTTCCTGCTGCAGCACGCGCAGAACACGCACGGCTTCCGCATCTACCTGGAGCCCGGGCCGGCCAGCAGCTCGCTCACGCCGCGGCTCACCATCCCGCCGCCGCTCGGGCCGGAGGCCGTGGCGCAGTCCCCGCTCATGAATTTCCTGGGCGACAGCAACCCCTTCAACCTGCTGCGCATGACGGGCCCCATCCTGCGGGACCACCCGGGCTTCGGCGAGGGCCGCCT +s mm8.chr12 12097938 289 - 120463159 GTAAAGATGAGCCTTCCAGCTACATTTGCACAACATGCAAGCAGCCCTTCAACAGCGCCTGGTTCCTGCTGCAGCACGCACAGAACACACATGGCTTCCGAATCTACCTGGAGCCTGGGCCGGCCAGCACCTCGCTCACGCCCAGGCTCACCATCCCGCCACCGCTCGGGCCGGAGACCGTGGCGCAGTCCCCACTCATGAATTTCCTGGGGGACAGCAATCCTTTCAACCTGCTGCGCATGACGGGCCCCATCCTGCGGGACCACCCTGGCTTCGGTGAGGGCCGCTT + +a score=629708.0 +s hg18.chr15 58852016 27 - 100338915 TATAAACACGATTATGTTTCTCACTAA +s mm8.chr2 61086875 27 - 181976762 TATAAACATGATTATGTTTCTCACTAA +s panTro2.chr15 59529448 27 - 100063422 TATAAACACGATTATGTTTCTCACTAA + +a score=373301.0 +s hg18.chr15 58851981 35 - 100338915 TTGGGGAGAGAATTGGATTCAAGCAGCATCCAAAA +s panTro2.chr15 59529413 35 - 100063422 TTGGGGAGAGAATTGGATTCAAGCAGCATCCAAAA +s mm8.chr2 61086840 35 - 181976762 TTGGGGAGAGAATTGGATTCAAGCAGCATCCAAAA + +a score=2237520.0 +s hg18.chr15 58851855 126 - 100338915 ATATTGCTTTAGGGGTATTTGATGTGGTGGTGACGGACCCCTCATGCCCAGCCTCGGTGCTGAAGTGTGCTGAAGCATTGCAGCTGCCTGTGGTGTCACAAGAGTGGGTGATCCAGTGCCTCATTG +s panTro2.chr15 59529287 126 - 100063422 ATATTGCTTTGGGGGTATTTGATGTGGTGGTGACGGACCCCTCATGCCCAGCCTCGGTGCTGAAGTGTGCTGAAGCATTGCAGCTGCCTGTGGTGTCACAAGAGTGGGTGATCCAGTGCCTCATTG +s mm8.chr2 61086714 126 - 181976762 ACATTGCTTTAGGGGTATTTGATGTGGTGGTGACAGACCCCTCATGCCCAGCCTCGGTGCTCAAGTGTGCTGAAGCCTTGCAACTGCCTGTGGTATCACAAGAATGGGTGATCCAGTGCCTCATTG + +a score=562984.0 +s hg18.chr15 41673708 75 + 100338915 ATGGCTGGTCCCTTCTCCCGTCTGCTGTCCGCCCGCCCGGGACTCAGGCTCCTGGCTTTGGCCGGAGCGGGGTCT +s panTro2.chr15 40727968 75 + 100063422 ATGGCTGGTCCCTTCTCCCGTCTGCTGTCCGCCCGCCCGGGACTCAGGCTCCTGGCTTTGGCCGGAGCGGGGTCT +i panTro2.chr15 C 0 C 0 +s mm8.chr2 121050290 75 + 181976762 ATGGCTGGTCCCTTCTCCCGTCTGCTGTCTGCCCGCCCTGGACTCAGGCTCCTGGCTTTGGCTGGAGCTGGGTCT +i mm8.chr2 C 0 C 0 + +a score=535926.0 +s hg18.chr15 41673783 74 + 100338915 CTAGCCGCTGGGTTTCTGCTCCGACCGGAACCTGTACGA---GCTGCCAGTGAACGACGGAGGCTGTATCCCCCGAG +s panTro2.chr15 40728043 74 + 100063422 CTAGCCGCTGGGTTTCTGCTCCGACCGGAACCTGTACGA---GCGGCCAGTGAACGACGGAGGCTGTATCCCCCGAG +i panTro2.chr15 C 0 C 0 +s mm8.chr2 121050365 77 + 181976762 CTCACCGCCGGGATTCTGCTCCGCCCGGAATCTGTAGGAGCTGCCGCTGCTGAACGGAGGAGACTGTATCCCCCGAG +i mm8.chr2 C 0 C 0 + +a score=1893961.0 +s hg18.chr15 58659665 89 - 100338915 GTCGAAGTACAGCCTGGGGCCTCCAGGACTGGTCACGACCTTCCTGGTCCCTGGTATTGACTATCAGCTTCCTTGGCCACCTGCTATGA +s panTro2.chr15 59329615 89 - 100063422 GTCGAAGTACAGCCTGGGGCCTCCAGGACTGGTCACGACCTTCCTGGTCCCTGGTATTGACTATCAGCTTCCTTGGCCACCTGCTATGA +s mm8.chr2 60921257 89 - 181976762 GTCGAAACTCAGCCTGGGGTCTCTACGACTGGTTCCAAGCCTCCTGGGCCCTGGCATTGCCCGTCAGCATTTTTGGCCACCTATTATGA + +a score=118616.0 +s hg18.chr15 41826029 31 + 100338915 ATGCGCCTCCGCCGCCTAGCGCTGTTCCCGG +s mm8.chr2 121105479 31 + 181976762 ATGCGCTTCAGCTGCCTAGCTCTGCTCCCGG +i mm8.chr2 C 0 C 0 +s panTro2.chr15 40866268 31 + 100063422 ATGCGCCTCCGCCGCCTAGCGCTGTTCCCGG +i panTro2.chr15 C 0 C 0 + +a score=284293.0 +s hg18.chr15 41826060 57 + 100338915 GTGTGGCGCTGCTTCTTGCCGCGGCCCGCCTCGCCGCTGCCTCCGACGTGCTAGAAC +s panTro2.chr15 40866299 57 + 100063422 GTGTGGCGCTGCTTCTTGCCGCGGCCCGCCTCGCCGCTGCCTCCGACGTGCTAGAAC +i panTro2.chr15 C 0 C 0 +s mm8.chr2 121105510 57 + 181976762 GCGTGGCGCTGCTGCTCGCCTCGGCCCGTCTCGCCGCCGCCTCCGATGTGTTGGAAC +i mm8.chr2 C 0 C 0 + +a score=259946.0 +s hg18.chr15 41826117 36 + 100338915 TCACGGACGACAACTTCGAGAGTCGCATCTCCGACA +s mm8.chr2 121105567 36 + 181976762 TGACGGACGAAAACTTCGAGAGTCGCGTCTCCGACA +i mm8.chr2 C 0 C 0 +s panTro2.chr15 40866356 36 + 100063422 TCACGGACGACAACTTCGAGAGTCGCATCTCCGACA +i panTro2.chr15 C 0 C 0 + +a score=478199.0 +s hg18.chr15 41826153 43 + 100338915 CGGGCTCTGCGGGCCTCATGCTCGTCGAGTTCTTCGCCCCCTG +s panTro2.chr15 40866392 43 + 100063422 CGGGCTCTGCGGGCCTCATGCTCGTCGAGTTCTTCGCCCCCTG +i panTro2.chr15 C 0 C 0 +s mm8.chr2 121105603 43 + 181976762 CGGGCTCGGCGGGGCTCATGCTAGTCGAGTTCTTCGCCCCCTG +i mm8.chr2 C 0 C 0 + +a score=71812.0 +s hg18.chr16 142908 17 + 88827254 ATGTCTCTGACCAAGAC +s mm8.chr11 32176663 17 + 121798632 ATGTCTCTGATGAAGAA +i mm8.chr11 C 0 C 0 +s panTro2.chr16 146323 17 + 90682376 ATGTCTCTGACCAAGAC +i panTro2.chr16 C 0 C 0 + +a score=320391.0 +s hg18.chr16 142925 78 + 88827254 TGAGAGGACCATCATTGTGTCCATGTGGGCCAAGATCTCCACGCAGGCCGACACCATCGGCACCGAGACTCTGGAGAG +s mm8.chr11 32176680 78 + 121798632 TGAGAGAGCTATCATCATGTCCATGTGGGAGAAGATGGCTGCTCAGGCCGAGCCCATTGGCACTGAGACTCTAGAGAG +i mm8.chr11 C 0 C 0 +s panTro2.chr16 146340 78 + 90682376 TGAGGGGACCATCATTGTGTCCATGTGGGCCAAGATCTCCACGCAGGCCGACACCATCGGCACCGAGACTCTGGAGAG +i panTro2.chr16 C 0 C 0 + +a score=1751098.0 +s hg18.chr16 88647174 117 - 88827254 CGGAAATTGTCCCGGTCCCGGTCCCGAGATAGACATCGGCGCCACCGCAGCCGTTCCCGGAGCCACAGCCGGGGACATCGTCGGGCTTCCCGGGACCGAAGTGCGAAATACAAGTAA +s panTro2.chr16 90501243 117 - 90682376 CGGAAATTGTCCCGGTCCCGGTCCCGAGATAGACATCGGCGCCACCGCAGCCGTTCCCGGAGCCACAGCCGGGGACATCGTCGGGCTTCCCGGGACCGGAGTGCGAAATACAAGTAA +s mm8.chr17 26007615 117 + 95177420 CGGAAGTTTTCCCGTTCCAGATCCCGAGATAGATACAGGCGCCATCGCAGCCGTTCCCGGAGCCACAGCCGGGGTCACCGCCGGGCTTCCAGGGACCGGAGTACAAAATACAAGTAA + +a score=362047.0 +s hg18.chr16 88647119 55 - 88827254 GTCACGCTCCCGGGATCGGCGTCGGAGGCGGTCAAGATCTACCTCCCGAGAGCGA +s panTro2.chr16 90501188 55 - 90682376 GTCACGCTCCCGGGATCGGCGTCGGAGGCGGTCAAGATCTACCTCCCGAGAGCGA +s mm8.chr17 26007560 55 + 95177420 GTCACGCTCCCGGGATCGTCGACGGAGGCGGTCTAGGTCTACCTCCAGAGAGCGG + +a score=119311.0 +s hg18.chr16 244413 4 + 88827254 ATGT +s panTro2.chr16 250030 4 + 90682376 ATGT +i panTro2.chr16 C 0 C 0 +s mm8.chr17 69229272 4 - 95177420 ATGA +i mm8.chr17 C 0 C 0 + +a score=805217.0 +s hg18.chr16 244417 122 + 88827254 TGGACCACAAGGACTTAGAGGCCGAAATCCACCCCTTGAAAAATGAAGAAAGAAAATCGCAGGAAAATCTGGGAAATCCATCAAAAAATGAGGATAACGTGAAAAGCGCGCCTCCACAGTCC +s panTro2.chr16 250034 122 + 90682376 TGGACCACAAGGACTTAGAAGCCGAAATCCACCCCTTGAAAAATGAAGAAAGAAAATCGCAGGAAAATCTGGGAAATCCATCAAAAAATGAGGATAACGTGAAAAGCGCGCCTCCACAGTCC +i panTro2.chr16 C 0 C 0 +s mm8.chr17 69229276 122 - 95177420 TGGACAACAAGGACTTAGAAGCTGAAATACACCCCTTGAAGAATGAGGACAAGAAATCACAGGAAAACCCAGGAAACCTACCAAGAAACGAAGATAACTTGAAGAGCAAGCCTGTGCCTTCC +i mm8.chr17 C 0 C 0 + +a score=459982.0 +s hg18.chr16 244539 41 + 88827254 CGGCTCTCCCGGTGCCGAGCGGCGGCGTTTTTTCTTTCATT +s panTro2.chr16 250156 41 + 90682376 CGGCTCTCCCGGTGCCGAGCGGCGGCGTTTTTTCTTTCATT +i panTro2.chr16 C 0 C 0 +s mm8.chr17 69229398 41 - 95177420 CGCTTGTCCCGGTGCCGCACAGTGGCATTTTTCCTTTCCCT +i mm8.chr17 C 0 C 0 + +a score=699262.0 +s hg18.chr16 244580 60 + 88827254 GTTTCTCTGCCTTTTTGTGGTGTTCGTCGTCTCATTCGTCATCCCGTGTCCAGACCGGCC +s panTro2.chr16 250197 60 + 90682376 GTTTCTCTGCCTTTTTGTGGTGTTCGTCGCCTCATTCGTCATCCCGTGTCCAGACCGGCC +i panTro2.chr16 C 0 C 0 +s mm8.chr17 69229439 60 - 95177420 GTTCACCTGCCTCTTCGTGGTGTTTGTCCTGTCTTTCATCATCCCATGTCCAGACCGTCC +i mm8.chr17 C 0 C 0 + +a score=263619.0 +s hg18.chr16 244640 41 + 88827254 GGCGTCACAGCGAATGTGGAGGATAGACTACAGTGCCGCTG +s panTro2.chr16 250257 41 + 90682376 GGCGTCACAGCAAATGTGGAGGATAGACTACAGTGCCGCTG +i panTro2.chr16 C 0 C 0 +s mm8.chr17 69229499 41 - 95177420 CTCCTCACAGGGCACGTGGAAGCTTGACTACAACAATGCAG +i mm8.chr17 C 0 C 0 + +a score=-184929.0 +s hg18.chr16 88567958 28 - 88827254 CCCTGGGGGTGGAGATGGGGTGGCCTAG +s panTro2.chr16 90415110 23 - 90682376 -----GGGGTGGAGATGGGGTGGCCTAG +s mm8.chr17 25938305 28 + 95177420 CCCTGAAGGTGCCGATGGGGAGTAGTAG + +a score=-142475.0 +s hg18.chr16 88567938 20 - 88827254 GAGCCCACAGCGGCTTGTGG +s mm8.chr17 25938285 20 + 95177420 GAGCCTGCAGCAACCAGTTC + +a score=-5251.0 +s hg18.chr16 88567925 13 - 88827254 TCCCACCCCTGTG +s mm8.chr17 25938272 13 + 95177420 GTCTACCCCCAGG + +a score=428688.0 +s hg18.chr16 88567871 54 - 88827254 CGTGTTCCCGTTTACGTGGAGGCCACGGCACTCGAGCCCCAGCCCTGCACTCCT +s panTro2.chr16 90414601 54 - 90682376 CGTGTTCCCAATTACGTGGAGGCCACGGCACTCGAGCCCCAGCCCTGCACTCCT +s mm8.chr17 25938218 54 + 95177420 GCCATTTCCATTCTTGCGGAAGCCTCTGCACTCAAGCCCCAGCCCTGCTCTCCA + +a score=1837801.0 +s hg18.chr18 52330965 74 - 76117153 ACTATGATTACCTGAACGACTGGGGGCCACGGTTCAAGAAACTTGCTGACATGTATGGTGGAGGTGATGACTGA +s panTro2.chr18 53421695 74 - 77261746 ACTATGATTACCTGAACGACTGGGGGCCACGGTTCAAGAAACTTGCTGACATGTATGGTGGAGGTGATGACTGA +s mm8.chr18 74003599 74 - 90736837 ACTATGACTACCTGAATGACTGGGGACCCCGCTTCAAGAAACTGGCGGACATGTACGGCGGTGGTGACGACTGA + +a score=469497.0 +s hg18.chr18 52330944 21 - 76117153 CAAGTAGTGGTGGTGAGCAGG +s panTro2.chr18 53421674 21 - 77261746 CAAGTAGTGGTGGTGAGCAGG +s mm8.chr18 74003578 21 - 90736837 CCAGTAGCGGTGGGGACCAGG + +a score=2266476.0 +s hg18.chr18 52330832 112 - 76117153 GGCCTTAAAGCGGCTGACAATGACCCCACAGCTCCACCATATGACTCCCTGTTAGTGTTTGACTATGAAGGCAGTGGCTCCACTGCTGGGTCCTTGAGCTCCCTTAATTCCT +s panTro2.chr18 53421562 112 - 77261746 GGCCTTAAAGCGGCTGACAATGACCCGACAGCTCCACCATATGACTCCCTGTTAGTGTTTGACTATGAAGGCAGTGGCTCCACTGCTGGGTCCTTGAGCTCCCTTAATTCCT +s mm8.chr18 74003466 112 - 90736837 GGCCTTAAAGCTGCTGACAACGACCCCACGGCGCCACCGTATGACTCCCTCTTAGTCTTTGACTACGAGGGCAGCGGCTCCACGGCTGGCTCCTTGAGCTCCCTCAACTCCT + +a score=1391235.0 +s hg18.chr18 59406881 165 + 76117153 ATGGATTCACTTGGCGCCGTCAGCACTCGACTTGGGTTTGATCTTTTCAAAGAGCTGAAGAAAACAAATGATGGCAACATCTTCTTTTCCCCTGTGGGCATCTTGACTGCAATTGGCATGGTCCTCCTGGGGACCCGAGGAGCCACCGCTTCCCAGTTGGAGGAG +s panTro2.chr18 60102164 165 + 77261746 ATGGATTCACTTGGCGCCGTCAGCACTCGACTTGGGTTTGATCTTTTCAAAGAGCTGAAGAAAACAAATGATGGCAACATCTTCTTTTCCCCTGTGGGCATCTTGACTGCAATTGGCATGCTCCTCCTGGGGACCCGAGGAGCCACCGCTTCCCAGTTGGAGGAG +i panTro2.chr18 C 0 C 0 +s mm8.chr1 108809701 165 + 197069962 ATGGACTCACTAGGCACAGCAGCCACACAGTTCCTGTTTGATCTTTTCAAAGAACTGAATAAAACAAATGATGGCAACGTCTTCTTTTCCCCTGTGGGCATCTCAACAGCCATTGGCATGATCATCCTGGGGACCCGAGGAGCCACTGCTTCTGAGTTACAGAAG +i mm8.chr1 C 0 C 0 + +a score=725586.0 +s hg18.chr18 16661111 110 - 76117153 CATCTCCTTCAACTAATGAAGAGTTCTGTTGTAATCACCCTTTCCTATTCTTCATAAGGCAAAATAAGACCAACAGCATCCTCTTCTATGGCAGATTCTCATCCCCATAG +s panTro2.chr18 17099295 110 - 77261746 CATCTCCTTCAACTAATGAAGAGTTCCGTTGTAATCACCCTTTCCTATTCTTCATAAGGCAAAATAAGACCAACAGCATCCTCTTCTATGGCAGATTCTCATCCCCGTAG +s mm8.chr1 88222178 101 - 197069962 TATCTTTACAGATTACAGAAGATTTCTATTGTGATCATCCATTG---------GTCAAGCACAGTAAGACCAACAGCATCCTCTTCTTTGGCACAATCTCTTCCCCTTAA + +a score=-126872.0 +s hg18.chr18 16661103 8 - 76117153 CGAATTAT +s panTro2.chr18 17099287 8 - 77261746 CGAATTAT +s mm8.chr1 88222173 5 - 197069962 TA---ATT + +a score=1725446.0 +s hg18.chr18 16660844 259 - 76117153 TGATGGAATGGACAAGTTTGCAGAATATGAGAGAGACATGTGTCGATTTACACTTACCTCGGTTCAAAATGGAAGAGAGCTATGACCTCAAGGACACGTTGAGAACCATGGGAATGGTGAATATCTTCAATG---GGGATGCAGACCTCTCAGGCATGACCTGGAGCCACGGTCTCTCAGTATCTAAAGTCCTACACAAGGCCTTTGTGGAGGTCACTGAGGAGGGAGTGGAAGCTGCAGCTGCCACCGCTGTAGTAGTAGT +s panTro2.chr18 17099028 259 - 77261746 TGATGGAATGGACAAGTTTGCAGAATATGAGAGAGACACATGTCGATTTACACTTACCTCGGTTCAAAATGGAAGAGAGCTATGACCTCAAGGACACGTTGAGAACCATGGGAATGGTGAATATCTTCAATG---GGGATGCAGACCTCTCAGGCATGACTGGGAGCCGCGGTCTCTCGGTATCTAAAGTCCTACACAAGGCCTTTGTGGAGGTCACTGAGGAGGGAGCGGAAGCTGCAGCTGCCACCGCTGTAGTAGTAGT +s mm8.chr1 88221911 262 - 197069962 TACTAGAATGGACAAGAGCAGAAAATATGCATATGACCGAGTTGTATTTATCTTTGCCTCGGTTCAAAGTGGAAGAGAAGTATGACCTCTCAGTTCCATTGAAACACATGGGGATGGTTGGCGCCTTTGATCCACAGAAGGCTGACTTCTCTGGCATGAACAGCACTCAAGGTCTTGTGGTGTCTAAAGTTTTACACAAGTCCTTTGTGGAGGTAAATGAAGAGGGAACAGAAGCTGCTGCTACCACGGGGATAAAATCCCA + +a score=231361.0 +s hg18.chr18 16660816 28 - 76117153 CTTGAAGAGAAACTCACTGCTGAGAAAT +s panTro2.chr18 17099000 28 - 77261746 CTTGAAGAGAAACTCACTGCTGAGAAAT +s mm8.chr1 88221883 28 - 197069962 CTTGAAGAACAACTCTCTACTGAAAAGT + +a score=2290170.0 +s hg18.chr18 59600586 154 + 76117153 ATGGCCTCCCTTGCTGCAGCAAATGCAGAGTTTTGCTTCAACCTGTTCAGAGAGATGGATGACAATCAAGGAAATGGAAATGTGTTCTTTTCCTCTCTGAGCCTCTTCGCTGCCCTGGCCCTGGTCCGCTTGGGCGCTCAAGATGACTCCCTCT +s panTro2.chr18 60332677 154 + 77261746 ATGGCCTCCCTTGCTGCAGCAAATGCAGAGTTTTGCTTCAACCTGTTCAGAGAGATGGATGACAATCAAGGAAATGGAAATGTGTTCTTTTCCTCTCTGAGCCTCTTCGCTGCCCTGGCCCTGGTCCGCTTGGGCGCTCAAGATGACTCTCTCT +i panTro2.chr18 C 0 C 0 +s mm8.chr1 109255795 154 + 197069962 ATGGCCTCCCTTGCTGCAGCAAATGCAGAATTTGGCTTCGACTTATTCAGAGAGATGGATAGTAGCCAAGGAAATGGAAATGTATTCTTCTCTTCCCTGAGCATCTTCACTGCCCTGACCCTAATCCGTCTGGGTGCTCGAGGTGACTGTGCAC +i mm8.chr1 C 0 C 0 + +a score=17919.0 +s hg18.chr18 59600740 14 + 76117153 CTCAGATTGATAAG +s panTro2.chr18 60332831 14 + 77261746 CTCAGATTGATAAG +i panTro2.chr18 C 0 C 0 +s mm8.chr1 109255949 14 + 197069962 GTCAGATTGACAAG +i mm8.chr1 C 0 C 0 + +a score=177042.0 +s hg18.chr19 59068595 42 + 63811651 ATGCCAGTGACGGTAACCCGCACCACCATCACAACCACCACG +s panTro2.chr19 59561975 42 + 64473437 ATGCCAGTGACGGTAACCCGCACCACCATCACAACCACCACG +i panTro2.chr19 C 0 C 0 +s mm8.chr7_random 82256 42 - 243910 ATGCCGGTAACAGTAACTCGTACAACCATCACGACTACAACG +i mm8.chr7_random C 0 C 0 + +a score=-114935.0 +s hg18.chr19 59068637 25 + 63811651 ACGTCATCTTCGGGCCTGGGGTCCC +s panTro2.chr19 59562017 25 + 64473437 ACGTCATCTTCGGGCCTGGGGTCCC +i panTro2.chr19 C 0 C 0 +s mm8.chr7_random 82298 7 - 243910 TCA------------------TCCT +i mm8.chr7_random C 0 C 0 + +a score=340234.0 +s hg18.chr19 59068662 63 + 63811651 CCATGATCGTGGGGTCCCCTCGGGCCCTGACACAGCCCCTGGGTCTCCTTCGCCTGCTGCAGC +s mm8.chr7_random 82305 63 - 243910 CCACCACTGTGGGGTCCGCTCGGGCGCTGACCCAGCCGCTGGGCCTCCTCCGCCTCCTGCAGC +i mm8.chr7_random C 0 C 0 +s panTro2.chr19 59562042 63 + 64473437 CCACGATCGTGGGGTCCCCTCGGGCCCTGACACAGCCCCTGGGTCTCCTTCGCCTGCTGCAGC +i panTro2.chr19 C 0 C 0 + +a score=295172.0 +s hg18.chr19 59068725 23 + 63811651 TGGTGTCTACCTGCGTGGCCTTC +s mm8.chr7_random 82368 23 - 243910 TAATATCCACCTGTGTGGCTTTC +i mm8.chr7_random C 0 C 0 +s panTro2.chr19 59562105 23 + 64473437 TGGTGTCTACCTGCGTGGCCTTC +i panTro2.chr19 C 0 C 0 + +a score=161030.0 +s hg18.chr19 59068748 38 + 63811651 TCGCTGGTGGCTAGCGTGGGCGCCTGGACGGGGTCCAT +s panTro2.chr19 59562128 38 + 64473437 TCGCTGGTGGCTAGCGTGGACGCCTGGACGGGGTCCAT +i panTro2.chr19 C 0 C 0 +s mm8.chr7_random 82391 38 - 243910 TCGCTGGTGGCCAGTGTGGGTGCCTGGACAGGGCCCAT +i mm8.chr7_random C 0 C 0 + +a score=1769153.0 +s hg18.chr19 59068786 173 + 63811651 GGGCAACTGGTCCATGTTCACCTGGTGCTTCTGCTTCTCCGTGACCCTGATCATCCTCATCGTGGAGCTGTGCGGGCTCCAGGCCCGCTTCCCCCTGTCTTGGCGCAACTTCCCCATCACCTTCGCCTGCTATGCGGCCCTCTTCTGCCTCTCGGCCTCCATCATCTACCCCA +s panTro2.chr19 59562166 173 + 64473437 GGGCAACTGGTCCATGTTCACCTGGTGCTTCTGCTTCTCCGTGACCCTGATCATCCTCATCGTGGAGCTGTGCGGGCTCCAGGCCCGCTTCCCCCTGTCTTGGCGCAACTTCCCCATCACCTTCGCCTGCTACGCGGCCCTCTTCTGCCTCTCGGCCTCCATCATCTACCCCA +i panTro2.chr19 C 0 C 0 +s mm8.chr7_random 82429 173 - 243910 GGGTAACTGGGCCATGTTCACCTGGTGTTTCTGCTTTGCTGTTACCCTCATCATCCTGATTGTGGAGTTAGGTGGACTCCAGGCCCACTTCCCCCTGTCATGGCGAAACTTCCCCATCACCTTTGCCTGCTACGCGGCCCTCTTCTGCCTGTCGTCTTCCATCATCTATCCCA +i mm8.chr7_random C 0 C 0 + +a score=1066893.0 +s hg18.chr19 59068959 145 + 63811651 CCACCTATGTCCAGTTCCTGTCCCACGGCCGTTCGCGGGACCACGCCATCGCCGCCACCTTCTTCTCCTGCATCGCGTGTGTGGCTTACGCCACCGAAGTGGCCTGGACCCGGGCCCGGCCCGGCGAGATCACTGGCTATATGGC +s panTro2.chr19 59562339 145 + 64473437 CCACCTATGTCCAGTTCCTGCCCCACGGTCGTTCGCGGGACCACGCCATCGCCGCCACCTTCTTCTCCTGCATCGCGTGTGTGGCTTACGCCACCGAAGTGGCCTGGACCCGGGCCCGGCCCGGCGAGATCACTGGCTATATGGC +i panTro2.chr19 C 0 C 0 +s mm8.chr7_random 82602 145 - 243910 CCACCTATGTGCAGTTCCTAGCTCATGGACGTACCCGGGACCATGCCATCGCTGCCACCACTTTCTCCTGCGTTGCCTGTTTGGCGTATGCCACTGAAGTGGCCTGGACCCGTGCAAGGCCCGGTGAGATCACTGGCTATATGGC +i mm8.chr7_random C 0 C 0 + +a score=925227.0 +s hg18.chr19 59069104 98 + 63811651 CACCGTACCCGGGCTGCTGAAGGTGCTGGAGACCTTCGTTGCCTGCATCATCTTCGCGTTCATCAGCGACCCCAACCTGTACCAGCACCAGCCGGCCC +s panTro2.chr19 59562484 98 + 64473437 CACCGTACCCGGGCTGCTGAAGGTGCTGGAGACCTTCGTGGCCTGCATCATCTTCGCGTTCATCAGCGACCCCAACCTGTACCAGCACCAGCCGGCCC +i panTro2.chr19 C 0 C 0 +s mm8.chr7_random 82747 98 - 243910 TACCGTGCCAGGGCTGCTCAAAGTTTTTGAGACCTTCGTAGCCTGTATCATCTTTGCCTTCATCAGTGAGCCGCTCCTGTATAATCAGAAGCCAGCCC +i mm8.chr7_random C 0 C 0 + +a score=900583.0 +s hg18.chr19 59069202 89 + 63811651 TGGAGTGGTGCGTGGCGGTGTACGCCATCTGCTTCATCCTAGCGGCCATCGCCATCCTGCTGAACCTGGGGGAGTGCACCAACGTGCTA +s panTro2.chr19 59562582 89 + 64473437 TGGAGTGGTGCGTGGCGGTGTACGCCATCTGCTTCATCCTAGCGGCCATCGCCATCCTGCTGAACCTGGGGGAGTGCACCAACGTGCTA +i panTro2.chr19 C 0 C 0 +s mm8.chr7_random 82845 89 - 243910 TGGAGTGGTGTGTGGCAGTCTATGCCATCTGCTTCATACTAGCAGGGGTGACCATCCTGCTCAACCTGGGGGATTGTACCAACGTGTTG +i mm8.chr7_random C 0 C 0 + +a score=962595.0 +s hg18.chr19 59069291 193 + 63811651 CCCATCCCCTTCCCCAGCTTCCTGTCGGGGCTGGCCTTGCTGTCTGTCCTCCTCTATGCCACCGCCCTTGTTCTCTGGCCCCTCTACCAGTTCGATGAGAAGTATGGCGGCCAGCCTCGGCGCTCGAGAGATGTAAGCTGCAGCCG------CAGCCATG------CCTACTACGTGTGTGCCTGGGACCGCCGACTGGCTGTGG +s panTro2.chr19 59562671 193 + 64473437 CCCATCCCCTTCCCCAGCTTCCTGTCGGGGCTGGCCTTGCTGTCTGTCCTCCTCTATGCCACTGCCCTTGTTCTCTGGCCCCTCTACCAGTTCGATGAGAAGTATGGCGGCCAGCCTCGGCGCTCGAGAGATGTAAGCTGCAGCCG------CAGCCATG------CCTACTACGTGTGTGCCTGGGACCGCCGACTGGCTGTGG +i panTro2.chr19 C 0 C 0 +s mm8.chr7_random 82934 205 - 243910 CCCATCCCTTTCCCCACCTTCCTCTCAGGCTTGGCCTTACTCTCTGTTCTCTTTTACGCCACTGCCATCGTCCTCTGGCCCCTCTACCAATTTGATCAGAGATATCAGGGCCAACCCCGCCGTTCAATGGATCCAAGCTGCACTCGTAGTATTAGTTATATACAACCCAACACGGTGTGTTTCTGGGACCGACGACTGGCGGTGT +i mm8.chr7_random C 0 C 0 + +a score=613379.0 +s hg18.chr19 59069484 80 + 63811651 CCATCCTGACGGCCATCAACCTACTGGCGTATGTGGCTGACCTGGTGCACTCTGCCCACCTGGTTTTTGTCAAGGTCTAA +s panTro2.chr19 59562864 80 + 64473437 CCATCCTGACGGCCATCAACCTACTGGCGTATGTGGCTGACCTGGTGCACTCTGCCCACCTGGTTTTTGTCAAGGTCTAA +i panTro2.chr19 C 0 C 0 +s mm8.chr7_random 83139 80 - 243910 CCATCCTGACAGGTATCAACCTGCTGGCATATGTGTCTGATCTGGTGTACTCCACTCGTCTGGTGTTCGTCAAGGTCTGA +i mm8.chr7_random C 0 C 0 + +a score=200956.0 +s hg18.chr19 4575513 112 - 63811651 CCCCCAAGGAGTGACCTATGCTGAGCTAAGCACCAGCGCCCTGTCTGAGGCAGCTTCAGACACCACCCAGGAGCCCCCAGGATCTCATGAATATGCGGCACTGAAAGTGTAG +s panTro2.chr19 4741219 112 - 64473437 CCCCCAAGGAGTGACCTATGCTGAGCTAAGCACCAGCGCCCTGTCTGAGGCAGCTTCAGACACCACCCAGGAGCCCCCAGGATCTCGTGAATATGCGGCACTGAAAGTGTAG + +a score=102826.0 +s hg18.chr19 4575505 8 - 63811651 ACGGCAGA +s panTro2.chr19 4741211 8 - 64473437 ACGGCAGA + +a score=177230.0 +s hg18.chr19 59297998 10 + 63811651 ATGGCTGCGA +s panTro2.chr19 59803934 10 + 64473437 ATGGCTGCGA +i panTro2.chr19 C 0 N 0 +s mm8.chr7 3220484 10 + 145134094 ATGGCCGGGA +i mm8.chr7 C 0 C 0 + +a score=406760.0 +s hg18.chr19 4509426 57 - 63811651 CGGGGTCCAGACAAACTGCTGCCCTACCCGACCCTGGCCAGCCCAGCCTCTGACTGA +s panTro2.chr19 4667557 57 - 64473437 CGGGGTCCAGACAAACTGCTGCCCTACCCGACCCTGGCCAGCCCAGCCTCTGACTGA +s mm8.chr7 141910596 57 - 145134094 CGAGAGCCAGACAAATTGCTACCCTACCCTACCCTGGCCAGCCCACCCTTTGACTAA + +a score=455500.0 +s hg18.chr19 4509363 63 - 63811651 ATTAAGGTTGAGGAAGACTTTGGCTTTGAAGCAGATGAGGCCCTGGATTCCAGTTGGGTTTCT +s panTro2.chr19 4667494 63 - 64473437 ATTAAGGTTGAGGAAGACTTTGGCTTTGAAGCAGATGAGGCCCTGGATTCCAGTTGGGTTTCT +s mm8.chr7 141910533 63 - 145134094 ATTAAGGTTGAGGAAGACTTTGGCTTTGAAGCAGATGAGGCCTTGGATTCAAGTTGGGTTTCC + +a score=-197707.0 +s hg18.chr2 118288583 6 + 242951149 GTCTCG +s mm8.chr1 73674351 6 - 197069962 GAGTCG +i mm8.chr1 I 86 C 0 +s panTro2.chr2b 118424760 6 + 248603653 GTCTCG +i panTro2.chr2b I 7 C 0 + +a score=207197.0 +s hg18.chr2 118288589 79 + 242951149 CTTCCACTTCTCCAGGGGGCGCTGCAAAGATTTTGGTCGCCAAAGATATCACGGTGCGCGCGTCTGGAAGCATTTCCGC +s panTro2.chr2b 118424766 79 + 248603653 CTTCCACTTCTCCAGGGGGCGCTGCAAAGATTTTGGTCGCCAAAGGTATCACGGTGCGCGCGTCTGGAAGCATTTCCGC +i panTro2.chr2b C 0 C 0 +s mm8.chr1 73674357 77 - 197069962 TCCTCCAGTCGCCAGGGGGCGCTGCAGGAAATTCGGTCTCCAAAGGGAACCCAGCTCTCA--CCAGGAACTGTTTCCGC +i mm8.chr1 C 0 C 0 + +a score=1362965.0 +s hg18.chr2 124556947 54 - 242951149 ACA-------GTAAACAC-GTGG----CTTGGATAACACCCATCATCCTATGAAGAATATAGGGAG +s panTro2.chr2b 130071925 54 - 248603653 ACA-------GTAAACAC-GTGG----CTTGGATAACACCCATCATCCTATGAAGAATATGGGGAG +s mm8.chr1 123328978 54 + 197069962 AGCCCTACAAA---GAACCGTGGGCAGTGTGGATGACACTCAGAGCCC---------CATAGGCAG + +a score=44574.0 +s hg18.chr2 220190202 12 + 242951149 atggcttaagct +s panTro2.chr2b 225564868 12 + 248603653 atggcttaagct +i panTro2.chr2b C 0 C 0 + +a score=189610.0 +s hg18.chr2 220190214 28 + 242951149 aattcgaagcaagtatgagccaccaaga +s panTro2.chr2b 225564880 28 + 248603653 aattcgaagcaagtatgagccaccaaga +i panTro2.chr2b C 0 C 0 + +a score=129775.0 +s hg18.chr2 22721476 64 - 242951149 aagaaactgccaaactgttttccagagtggttgtcccattttacctttccactggtaatgtatg +s panTro2.chr2b 22992739 64 - 248603653 aagaaactgccaaactgttttccagagtggttgtcccattttacctttccactggtaatgtatg + +a score=208210.0 +s hg18.chr2 22721289 187 - 242951149 atcactgcaccattcaccattcacccattaaaggacatctgcattgtctcagtttttggctattgcaaataaaactgctataaacatttgtttagtttattgtgtgaatataagtcttcctttctttgtgataaatgcccaagagtgcaattgctgagtcatatggtagttgtatgtttaggttttt +s panTro2.chr2b 22992552 187 - 248603653 atcactgcaccattaaccattcacccattaaaggacatctgcattgtctcagtttttggctattgcaaataaaactgctataaacatttgtttagtttattgtgtgaatataagtcttcctttctttgtgataaatgcccaagagtgcaattgctgcgtcatatggtagttgtatgtttaggttttt + +a score=27396.0 +s hg18.chr2 22721263 26 - 242951149 ttgtgtgcgtcaaaagcttattcttt +s panTro2.chr2b 22992526 26 - 248603653 ttgtttgcgtcaaaagcttattcttt + +a score=336518.0 +s hg18.chr2 22721013 250 - 242951149 Tagtgtcacaaccaaaatattgacatggacggggcaaaattagagaacatttcaatcacaataatggtcccccaagttgcctttttgtagctgtcccctccctaacctctggaaaccactaacccgttctctatttctgcaacactgtcactgtaagaatattgtataaatggaatcatacattgtgtagccttttgagaatggctttttcaactcagtgctattctctggagatacacagtttactgtg +s panTro2.chr2b 22992276 250 - 248603653 Tagtgtcacaaccaaaatattgacatggacggggcaaaattaaagaacatttcaatcacaataatggtcccccaagttgcctttttatagctgtcccctccctaacctctggaaaccactaacccgttctctatttctgcaacactgtcactgtaagaatattgtataaatggaatcatacattgtgtagccttttgagaatggctttttcaactcaatgctattctctggagatacacagtttaccgtg + +a score=86437.0 +s hg18.chr2 22720918 95 - 242951149 tttgagtgtttagtacctttatttttaatataatgtatttacctgtgtttgaatataatgtatttattttttaattatACATTTTATTTTAAGAT +s panTro2.chr2b 22992181 95 - 248603653 tttgagtgtttagtacctttatttttaatataatgtatttacctgtgtttgaatataatgtatttattttttaattatACATTTTATTTTAAGAT + +a score=271443.0 +s hg18.chr2 22720728 190 - 242951149 tctggtgtaaatactcccacaatggccaatttcaaactattagtgtgacatcactgaatgcagaattgggaagaaatgtgccatagcacatcactatagaatatttccaccatacagatataacagacataaataacttccagaatatagacaatagtaaaagtaacaaaataattgggaagtcatgaat +s panTro2.chr2b 22991991 190 - 248603653 tctggtgtaaatactcccacgatggccaatttcaagctattagtgtgacatcactgaatgcagaattgggaagaaatgtgccatagcacatcactatagaatatttccaccatacagatataacagacataaataacttccagaatatagacaatagtaaaagtaacaaaataattgggaagtcatgaat + +a score=197745.0 +s hg18.chr2 22720624 104 - 242951149 ATGCATGAGAAATTCCCTAAC---TTAAAAGCAgt-----cccggtaaaagtttaacaaccatctacgaaaaaaaggaggggaggacctaatttgtagtgtctgctgatttc +s panTro2.chr2b 22991887 104 - 248603653 atgcatgagaaattccctacc---ttaAAAGCAgt-----cccggtaaaagtttaacaaccatctacgaaaaaaaggaggggaggacctaatttgtagtgtctgctgatttc +s mm8.chr1 121613757 108 - 197069962 ATGC-TGTGGAA--CCCTCCTAGGTTGCGGACAGTGGAATGCTGGCAGACACAGAGCAGCCTGTTACGGAGAGGAAAGGGACACCATCTGCTT-GCATTGTCTGCTCATTTC + +a score=50206.0 +s hg18.chr2 22720593 31 - 242951149 TG----GAGTCATCCAGCATCTAAACCCACTTCCT +s panTro2.chr2b 22991856 31 - 248603653 TG----GAgtcatccagtatctaaacccacttcct +s mm8.chr1 121613722 35 - 197069962 CAGCCAGGGTTGGTCGGTACCTAAATGCACTTCTT + +a score=50867.0 +s hg18.chr2 22720539 54 - 242951149 ATAACTGATCTGAGACATTAT-CCATTTTTTGATTGACATTTGCTATTTGGGAGG +s panTro2.chr2b 22991802 54 - 248603653 ATAACTGATCTGAGACATTAT-CCATTTTTTGATTGACATTTGCTATTTGGGAGG +s mm8.chr1 121613670 52 - 197069962 A--A-TGATCTGAGGCCTTTCCCGACTTTTTAGTAAACATTCATTATTTGGGAAG + +a score=357793.0 +s hg18.chr2 22720367 172 - 242951149 ACC---ATCCTGCCATCTCTATGCTGGATATTAAAGAAATGAGATTATAAACAGCCAG-------GATTCCATTCCTCCA-----GCATCTGCTTCAACCACAGTCCACAACAGCCTTTTATAAAATGAGGGAAGCAATGAGGTAGAGAGGAAATAGCCTTAGGAAGAGCC-AGCTTCTTCCTCCTCT +s panTro2.chr2b 22991630 172 - 248603653 ACC---ATCCTGCCATCTCTATGCTGGATATTAAAGAAATGAGATTATAAACAGCCAG-------GATTCCATTCCTCCA-----GCATCTGCTTCAACCACAGTCCACAACAGCCTTTTATAAAATGAGGGAAGCAATGAGGTAGAGAGGAAATAGCCTTAGGAAGAGCC-AGCTTCTTCCTCCTCT +s mm8.chr1 121613496 173 - 197069962 ---aCTCTCATCCCATTCCTTTGCCAAAAATTCAAAAGATGAGATTACAAAAGATGAGAGGATGCAGTGCTCCAGACCCATCCTCAATTCCACCTCAACCACAGGCTGCAGGCCCCTTGAATAAAATAA----------AACACAGGGGG--GAAAGCCTGAGGAAGAGCCCAGGTTCTGTCTCCTCT + +a score=3197.0 +s hg18.chr2 22720323 44 - 242951149 AAAGAGATCTGAGCATTCATAAAACTCCATTTTTTTGTAGTTTT +s panTro2.chr2b 22991586 44 - 248603653 AAAGAGATCTGAGCATTCATAAAACTCCATTTTTTTGTAGTTTT +s mm8.chr1 121613132 41 - 197069962 --AAACAGCTTAGCATCCATAAGCCTCCATATTTTTGTAGCCT- + +a score=51138.0 +s hg18.chr2 22720280 43 - 242951149 GAT--GGAGAAAGATTAGAAACAGCAGTGCCTAGGGAA-AAGTGTA +s panTro2.chr2b 22991543 43 - 248603653 GAT--GGAGAAAGATTAGAAACGGCAGTGCCTAGGGAA-AAGTGTA +s mm8.chr1 121613086 46 - 197069962 AATGGACAGGGGGAATACAAAGGGCATTGACTAAGGGGGAAAGGTC + +a score=1119822.0 +s hg18.chr20 29105541 10 - 62435964 CCTCACCTGA +s panTro2.chr20 29927599 10 - 62293572 CCTCACCTGA +s mm8.chr2 26465210 10 - 181976762 CCTCACATGA + +a score=577225.0 +s hg18.chr20 33513606 69 + 62435964 ATGGAGACAAGAAGCCCTGGGTTGAACAACATGAAGCCCCAGTCACTGCAGCTGGTACTGGAAGAGCAG +s mm8.chr2 155653412 66 + 181976762 ATGGAGACAGGGAGCCCCGGGTTG---AACATGAAGCCCCAGTCCTTGCAGCTGGTGCTGGAGGGGCAG +i mm8.chr2 C 0 C 0 +s panTro2.chr20 32554547 69 + 62293572 ATGGAGACAAGAAGCCCTGGGTTGAACAACATGAAGCCCCAGTCACTGCAGCTGGTACTGGAAGAGCAG +i panTro2.chr20 C 0 C 0 + +a score=1499195.0 +s hg18.chr20 33513675 117 + 62435964 GTGCTGGCACTACAGCAGCAGATGGCAGAGAATCAGGCAGCCTCCTGGCGGAAGCTGAAGAACTCCCAGGAGGCCCAGCAGAGACAAGCAACCCTTGTGAGGAAGCTGCAGGCCAAG +s panTro2.chr20 32554616 117 + 62293572 GTGCTGGCACTACAGCAGCAGATGGCAGAGAATCAGGCAGCCTCCTGGCGGAAGCTGAAGAACTCCCAGGAGGCCCAGCAGAGACAAGCAACCCTTGTGAGGAAGCTGCAGGCCAAG +i panTro2.chr20 C 0 C 0 +s mm8.chr2 155653478 117 + 181976762 GTGCTGGCGCTGCAGCAGCAGATGGCCGAGAATCAGGCTGCCTCCTGGCGGAAACTGAAGAACTCCCAAGAGGCCCAGAAGAGACAAGCAACCCTCGTGAGGAAGCTGCAGGCCAAG +i mm8.chr2 C 0 C 0 + +a score=366540.0 +s hg18.chr20 28856457 7 - 62435964 TCCCTAG +s panTro2.chr20 29670686 7 - 62293572 TCCCTAG +s mm8.chr2 26282855 7 - 181976762 TCCCTAG + +a score=182231.0 +s hg18.chr20 28856437 20 - 62435964 ATTTTGGAAGATGGTCTGGT +s panTro2.chr20 29670666 20 - 62293572 ATTTTGGAAGATGGTCTGGT +s mm8.chr2 26282835 20 - 181976762 ATTTTGGAAGATGGTCTGAT + +a score=1173268.0 +s hg18.chr20 33593260 60 + 62435964 ATGGAGGCGCTGGGGAAGCTGAAGCAGTTCGATGCCTACCCCAAGACTTTGGAGGACTTC +s panTro2.chr20 32635706 60 + 62293572 ATGGAGGCGCTGGGGAAGCTGAAGCAGTTCGATGCCTACCCCAAGACTTTGGAGGACTTC +i panTro2.chr20 C 0 C 0 +s mm8.chr2 155699581 60 + 181976762 ATGGAGGCGCTGGGGAAGCTGAAGCAGTTCGATGCCTACCCTAAGACTCTGGAGGACTTC +i mm8.chr2 C 0 C 0 + +a score=512129.0 +s hg18.chr20 33593320 28 + 62435964 CGGGTCAAGACCTGCGGGGGCGCCACCG +s panTro2.chr20 32635766 28 + 62293572 CGGGTCAAGACCTGCGGGGGCGCCACCG +i panTro2.chr20 C 0 C 0 +s mm8.chr2 155699641 28 + 181976762 CGGGTCAAGACCTGCGGGGGTGCCACGG +i mm8.chr2 C 0 C 0 + +a score=610562.0 +s hg18.chr21 32707032 4 + 46944323 ATGC +s panTro2.chr21 32160918 4 + 46489110 ATGC +i panTro2.chr21 C 0 C 0 +s mm8.chr16 90720131 4 + 98252459 ATGC +i mm8.chr16 I 2 C 0 + +a score=749215.0 +s hg18.chr21 32707036 127 + 46944323 TTCTGCCGGGACGCGCACGCCAACCGCCGACGCCCCAGCCCGTGCAGCATCCCGGCCTCCGCCGGCAGGTAGAGCCGCCGGGGCAGCTCCTGCGCCTCTTCTACTGCACTGTCCTGGTCTGCTCCAA +s panTro2.chr21 32160922 127 + 46489110 TTCTGCCGGGACCCGCACGCCAACCGCCGACGCCCCAGCCCGTGCAGCATCCCGGCCTCCGCCGGCAGGTAGAGCCGCCGGGGCAGCTCCTGCGCCTCTTCTACTGCACTGTCCTGGTCTGCTCCAA +i panTro2.chr21 C 0 C 0 +s mm8.chr16 90720135 127 + 98252459 TCCTGCCAGGACACCCGCGTCCACCACCCGCGCCCCAATCGGCGCAGAATCAGGGCCTCCGCAGGCAGGTAGAGCCTCCGGGGCAGCTTCTGCGCCTGTTCTACTGCACGGTCCTAGTGTGCTCCAA +i mm8.chr16 C 0 C 0 + +a score=211993.0 +s hg18.chr21 32707163 29 + 46944323 AGAGATCTCAGCGCTCACCGACTTCTCTG +s panTro2.chr21 32161049 29 + 46489110 AGAGATCTCAGCGCTCACCGACTTCTCTG +i panTro2.chr21 C 0 C 0 +s mm8.chr16 90720262 29 + 98252459 AGAGACCTCCGCGCTCACCGATTTCTCTG +i mm8.chr16 C 0 C 0 + +a score=98928.0 +s hg18.chr21 14074369 313 - 46944323 TGGGTGCTTCCTGCATTGCGGGTCTCACGGGGAGGAGACGAGAGTGCCCCTGGTTGAGTCAGGAAAGAATTCTATCTTCACGTCGCTGCCAGCAAATGACCACAGCAGCTTCACGACCTCTGCAGGAACCTATCTTGGTAAAGAAACGGGGCCTATGTGGTGGCCGAGCCTCAGGTGTGGCCGAGCTTCAGGTGTGGCCCTTATGCACAGCACAGCCCAAGCCTGTGGGCACCACTCGCCCTGGGCTGCCTGGCACCTGGACTCCTTCCCATCCTTGGCCGAGGTCTGCGTGGCCCTTCAGGGCCGAATCTGA +s panTro2.chr21 14164701 313 - 46489110 TGGGTGCTTCCTGCATTGCGGGTCTCACGGGGAGGAGCCAAGAGTGCCCCTGGTTGAGTCAGGAAAGAATTCTATCTTCACGTCGCTGCCAGCAAATGACCACAGCAGCTTCACGACCTCTGCAGGAACCTATCTCGGTAAAGAAACAGAGCCTATCTGGTGGCTGAGCCTCAGGTGTGGCCGAGCTTCAGGTGTGGCCCTTATGCACAGCACAGCCCAAGCCTGTGGGCACCACTCGCCCTGGGCTGCCTGGCACCTGGACTCCTTCCCATCCTTGGCCGAGGTCTGCGTAGCCCTTCAGGGCCGAATCTGA + +a score=108541.0 +s hg18.chr21 14074301 68 - 46944323 ATGGAGCGCCCTCTCATCTGGCACCTTCCTGGCCTCTTTCCCAGGCCCCAGTTCTGTCCATGCAGCTG +s panTro2.chr21 14164633 68 - 46489110 ATGGAGCGCCCTCTCATCTGGCACCTGCCTGGCCTCTTTCCCAAGCCCCAGTTCTGTCCATGCAGCTG + +a score=637432.0 +s hg18.chr21 33321040 72 + 46944323 ATGGACTCGGACGCCAGCCTGGTGTCCAGCCGCCCGTCGTCGCCAGAGCCCGATGACCTTTTTCTGCCGGCC +s panTro2.chr21 32770081 72 + 46489110 ATGGACTCGGACGCCAGCCTGGTGTCCAGCCGCCCGTCGTCGCCAGAGCCCGATGACCTTTTTCTGCCGGCC +i panTro2.chr21 C 0 C 0 +s mm8.chr16 91115258 72 + 98252459 ATGGACTCGGACGCCAGCCTGGTGTCTAGTCGCCCATCGTCCCCAGAACCCGATGATCTTTTTCTGCCCGCC +i mm8.chr16 C 0 C 0 + +a score=158069.0 +s hg18.chr21 33321112 116 + 46944323 CGGAGTAAGGGCAGCAGCGGCAGCGCCTTCACTGGGGGCACCGTGTCCTCGTCCACCCCGAGTGACTGCCCGCCGGAGCTGAGCGCCGAGCTGCGCGGCGCTATGGGCTCTGCGGG +s panTro2.chr21 32770153 116 + 46489110 CGGAGTAAGGGCAGCAGCGGCAGCGCCTTCACTGGGGGCACCGTGTCCTCGTCCACCCCGAGCGACTGCCCGCCGGAGCTGAGCGCCGAGCTGCGCGGCGCTATGGGCTCTGCGGG +i panTro2.chr21 C 0 C 0 +s mm8.chr16 91115330 116 + 98252459 CGGAGCAAGGGGGGAAGCAGCAGCGGCTTCACAGGAGGGACTGTGTCCTCGTCCACGCCGAGCGACTGCCCGCCAGAGCTGAGCTCCGAGCTACGAGGGGCCATGGGCGCGTCAGG +i mm8.chr16 C 0 C 0 + +a score=56737.0 +s hg18.chr21 33321228 102 + 46944323 CGCGCATCCTGGGGACAAGCTAGGAGGCAGTGGCTTCAAGTCATCCTCGTCCAGCACCTCGTCGTCTACGTCGTCGGCGGCTGCGTCGTCCACCAAGAAGGA +s panTro2.chr21 32770269 102 + 46489110 CGCCCATCCTGGGGACAAGCTAGGAGGCAGTGGCTTCAAGTCATCCTCGTCCAGCACCTCGTCGTCTACGTCGTCGGCGGCTGCGTCGTCCACCAAGAAGGA +i panTro2.chr21 C 0 C 0 +s mm8.chr16 91115446 102 + 98252459 CGCGCATCCCGGGGACAAACTGGGCGGCGGTGGCTTCAAGTCATCTTCCTCCAGCACCTCCTCGTCCACGTCCTCGGCGGCCACGTCTTCCACCAAGAAAGA +i mm8.chr16 C 0 C 0 + +a score=1401662.0 +s hg18.chr21 33321330 142 + 46944323 CAAGAAGCAAATGACAGAGCCGGAGCTGCAGCAGCTGCGTCTCAAGATCAACAGCCGCGAGCGCAAGCGCATGCACGACCTCAACATCGCCATGGATGGCCTCCGCGAGGTCATGCCGTACGCACACGGCCCTTCGGTGCGC +s panTro2.chr21 32770371 142 + 46489110 CAAGAAGCAAATGACAGAGCCGGAGCTGCAGCAGCTGCGTCTCAAGATCAACAGCCGCGAGCGCAAGCGCATGCACGACCTCAACATCGCCATGGATGGCCTGCGCGAGGTCATGCCGTACGCACACGGCCCTTCGGTGCGC +i panTro2.chr21 C 0 C 0 +s mm8.chr16 91115548 142 + 98252459 CAAGAAGCAGATGACTGAGCCCGAGCTGCAGCAGCTGCGCCTGAAGATCAACAGCCGCGAACGCAAGCGCATGCACGACCTCAACATCGCCATGGACGGCCTGCGGGAGGTCATGCCTTACGCGCACGGGCCGTCGGTGCGC +i mm8.chr16 C 0 C 0 + +a score=494453.0 +s hg18.chr21 33321472 43 + 46944323 AAGCTTTCCAAGATCGCCACGCTGCTGCTGGCGCGCAACTACA +s panTro2.chr21 32770513 43 + 46489110 AAGCTTTCCAAGATCGCCACGCTGCTGCTGGCGCGCAACTACA +i panTro2.chr21 C 0 C 0 +s mm8.chr16 91115690 43 + 98252459 AAGCTCTCCAAGATCGCCACGCTGCTGCTGGCGCGAAACTACA +i mm8.chr16 C 0 C 0 + +a score=611248.0 +s hg18.chr21 33321515 47 + 46944323 TCCTCATGCTCACCAACTCGCTGGAGGAGATGAAGCGACTGGTGAGC +s panTro2.chr21 32770556 47 + 46489110 TCCTCATGCTCACCAACTCGCTGGAGGAGATGAAGCGACTGGTGAGC +i panTro2.chr21 C 0 C 0 +s mm8.chr16 91115733 47 + 98252459 TCCTCATGCTCACCAACTCGCTGGAGGAGATGAAGCGACTGGTGAGC +i mm8.chr16 C 0 C 0 + +a score=167373.0 +s hg18.chr21 33321562 184 + 46944323 GAGATCTACGGGGGCCACCACGCTGGCTTCCACCCGTCGGCCTGCGGCGGCCTGGCGCACTCCGCGCCCCTGCCCGCCGCCACCGCGCACCCGGCAGCAGCAGCGCACGCCGCACATCACCCCGCGGTGCACCACCCCATCctgccgcccgccgccgcagcggctgctgccgccgctgcagccg +s panTro2.chr21 32770603 184 + 46489110 GAGATCTACGGGGGCCACCACGCTGGCTTCCACCCGTCGGCCTGCGGCGGCCTGGCGCACTCTGCGCCCCTGCCCGCCGCCACCGCGCACCCGGCAGCAGCAGCGCACGCCGCACATCACCCCGCGGTGCACCACCCCATCctgccgcctgccgccgcagcggctgctgccgccgctgcagccg +i panTro2.chr21 C 0 C 0 +s mm8.chr16 91115780 184 + 98252459 GAGATCTACGGGGGTCACCACGCCGGCTTCCACCCATCGGCCTGTGGCGGGCTGGCACACTCGGCGCCTCTACCCACCGCCACGGCGCACCCCGCGGCCGCCGCGCACGCCGCGCACCACCCGGCCGTGCACCACCCCATCCTCCCTCccgcagccgccgccgccgccgcagccgccgccgccg +i mm8.chr16 C 0 C 0 + +a score=235994.0 +s hg18.chr21 33321746 103 + 46944323 cggctgTGTCCAGCGCCTCTCTGCCCGGATCCGGGCTGCCGTCGGTCGGCTCCATCCGTCCACCGCACGGCCTACTCAAGTCTCCGTCTGCTgccgcggccgc +s mm8.chr16 91115964 103 + 98252459 cAGCGGTGTCCAGCGCCTCTCTACCGGGCTCCGGGCTGTCCTCGGTCGGATCCATCCGGCCTCCGCACGGCCTGCTCAAGTCACCGTCGGCAGCCGCAGCCGC +i mm8.chr16 C 0 C 0 +s panTro2.chr21 32770787 103 + 46489110 cggctgTGTCCAGCGCCTCTCTGCCCGGATCCGGGCTGCCGTCGGTCGGCTCCATCCGTCCACCGCACGGCCTACTCAAGTCTCCGTCTGCTGCCGCAgccgc +i panTro2.chr21 C 0 C 0 + +a score=336560.0 +s hg18.chr21 33321849 74 + 46944323 cccgctggggggcgggggcggcggcAGTGGGGCGAGCGGGGGCTTCCAGCACTGGGGCGGCATGCCCTGCCCCT +s panTro2.chr21 32770890 74 + 46489110 cccgctggggggcgggggcggcggcAGTGGGGCGAGCGGGGGCTTCCAGCACTGGGGCGGCATGCCCTGCCCCT +i panTro2.chr21 C 0 C 0 +s mm8.chr16 91116067 74 + 98252459 CCCTCTCGGAGGCGGGGGTGGAGGCAGCGGTGGCAGCGGTGGCTTCCAGCACTGGGGCGGCATGCCGTGCCCCT +i mm8.chr16 C 0 C 0 + +a score=333126.0 +s hg18.chr21 33321923 30 + 46944323 GCAGCATGTGCCAGGTGCCGCCGCCGCACC +s panTro2.chr21 32770964 30 + 46489110 GCAGCATGTGCCAGGTGCCGCCGCCGCACC +i panTro2.chr21 C 0 C 0 +s mm8.chr16 91116141 30 + 98252459 GCAGCATGTGCCAGGTGCCGCCGCCGCACC +i mm8.chr16 C 0 C 0 + +a score=245579.0 +s hg18.chr21 33321953 40 + 46944323 ACCACGTGTCGGCTATGGGCGCCGGCAGCCTGCCGCGCCT +s panTro2.chr21 32770994 40 + 46489110 ACCACGTGTCGGCCATGGGCGCCGGCAGCCTGCCGCGCCT +i panTro2.chr21 C 0 C 0 +s mm8.chr16 91116171 40 + 98252459 ACCACGTGTCGGCTATGGGCGCCGGCACCTTGCCGCGCCT +i mm8.chr16 C 0 C 0 + +a score=-238175.0 +s hg18.chr21 33321993 19 + 46944323 CACCTCCGACGCCAAGTGA +s panTro2.chr21 32771034 19 + 46489110 CACCTCCGACGCCAAGTGA +i panTro2.chr21 C 0 C 0 +s mm8.chr16 91116211 19 + 98252459 CACCTCCGACGCCAAGTGA +i mm8.chr16 C 0 C 0 + +a score=157215.0 +s hg18.chr21 13199327 2 - 46944323 GA +s mm8.chr16 6787486 2 - 98252459 GA +s panTro2.chr21 13299591 2 - 46489110 GA + +a score=753161.0 +s hg18.chr21 13199283 44 - 46944323 CACTCTGATCTACAAATTTGGAAGAACCGAAGAGCTATGGACCT +s panTro2.chr21 13299547 44 - 46489110 CACTCTGATCTACAAATTTGGAAGAACCGAAGAGCTATGGACCT +s mm8.chr16 6787442 44 - 98252459 CACTCTGATCTACAAATTTGGAAGAACTGAAGAGCTCTGGGCCT + +a score=254771.0 +s hg18.chr22 30120223 42 + 49691432 ctcccatgctgtggaagctttgctattttggtcttcgcaatg +s panTro2.chr22 30280431 42 + 50165558 ctcccatgctgtggaagctttgttattttgctcttcgcaaag +i panTro2.chr22 C 0 C 0 + +a score=154402.0 +s hg18.chr22 19531009 4 - 49691432 CAAT +s panTro2.chr22 19843351 4 - 50165558 CAGT +s mm8.chr11 3149702 4 + 121798632 CAGT + +a score=61287.0 +s hg18.chr22 19530974 35 - 49691432 ATCTCCCAAAATAGGTTAGCCTTGCGGGGAGTGAT +s panTro2.chr22 19843316 35 - 50165558 ATCTCCCAAAATAGGTTAGCCTTGCGGGGAGTGAT + +a score=74044.0 +s hg18.chr22 19530840 134 - 49691432 ttactatccccatgttacatgaggaaactgaggctcataaaggttgggtaatttgttcagggctccacagctaactagaggtggacctgcaatttcaaaccctgatctgcctggtcggagtacttaa-ttacATG +s panTro2.chr22 19843181 135 - 50165558 ttactatccccatgttacatgaggaaactgaggctcataaaggttgggtaatttgttcagggctccacagctaactagaggtggacctgcaacttcaaaccctgatctgcctgGTCGGAGTACTTAAATTACATG + +a score=81981.0 +s hg18.chr22 19530787 53 - 49691432 aagtaccatctccctccattactaacaatcaccaccgcagaaagtaagtgcta +s panTro2.chr22 19843128 53 - 50165558 aagtaccatctccctccattactaacaatcaccaccgcagaaagtaagtgcta + +a score=-1554.0 +s hg18.chr22 19530771 16 - 49691432 acagtatttgacatat +s panTro2.chr22 19843112 16 - 50165558 acagtatttgacatgt + +a score=90207.0 +s hg18.chr22 30665273 17 + 49691432 GGCCTACAGTGGGAGAA +s panTro2.chr22 30838165 17 + 50165558 GGCCTACAGTGGGAGAA +i panTro2.chr22 I 13 C 0 + +a score=642220.0 +s hg18.chr22 30665290 70 + 49691432 AAAGTTAAAATCCTATCTGGGTGACATTATTAATAATTTGTGGACAGGCGGCTGCTCCAGCTCAAGATGG +s panTro2.chr22 30838182 70 + 50165558 AAAGTTAAAATCCTATCTGGGTGACATTATTAATAATTTGTGGACAGGCGGCTGCTCCAGCTCAAGATGG +i panTro2.chr22 C 0 C 0 + +a score=271624.0 +s hg18.chr22 18752166 212 - 49691432 ctgacaaaggagttgtatccggaataaaaagaccaacaggccaactttaaaactcaaaaaaaaaaatgacaCTTGGAGAAGAGCTTCAAGGTGACTGACtagaggtgcccaacattcgtctcctccacaaagaaggagcaaaacagataatcacatgtcaaatagagcatctaacagagaatgctggaattcagcggggaagtgacagaacc +s panTro2.chr22 19062041 173 - 50165558 ctgacaaaggagttgtatctggaataAAAAGACCAACAGGCCAActt---------------------------------------caaggtgactgactagaggtgcccaacattcgtctcctccacaaagaaggagcaaaacagataatcacatgtcaaatagagcatctaacagagaatgctggaattcagcggggaagtgacagaacc + +a score=489900.0 +s hg18.chr5 131424298 81 + 180857866 ATGAGCCGCCTGCCCGTCCTGCTCCTGCTCCAACTCCTGGTCCGCCCCGGACTCCAAGCTCCCA----TGACCCAGACAACGCCC +s panTro2.chr5 133682646 81 + 183994906 ATGAGCCGCCTGCCCGTCCTGCTCCTGCTCCAACTCCTGGTCCGCCCCGGACTCCAAGCTCCCA----TGACCCAGACAACGTCC +i panTro2.chr5 C 0 C 0 +s mm8.chr11 67687980 73 - 121798632 ACCAGCATCCACACCATGCTGCTCCTGCTCCTGATGCTCTTCCACCTGGGACTCCAAGCTTCAATCAGTGGCC------------ +i mm8.chr11 C 0 I 19 + +a score=-86483.0 +s hg18.chr5 131424379 81 + 180857866 TTGAAGACAAGCTGGGTTAACTGCTCTAACATGATCGATGAAATTATAACACACTTAAAGCAGCCACCTTTGCCTTTGCTG +s panTro2.chr5 133682727 81 + 183994906 TTGAAGACAAGCTGGGTTAACTGCTCTAACATGATCGATGAAATTATAACACACTTAAAGCAGCCACCTTTGCCTTTGCTG +i panTro2.chr5 C 0 C 0 +s mm8.chr11 67688072 52 - 121798632 ----CAGAACGTTGA----ATTGCAGCTCTATTGTCAAGGAGATTATAG------GGAAGCTCCCA--------------- +i mm8.chr11 I 19 C 0 + +a score=1522676.0 +s hg18.chr5 49301194 71 - 180857866 TCTCCAATAAGTGGTTCCATGAACGAGGACAGGAGTTCTTGAGACCTTGTGGATCAACAGAAGTTGACTGA +s panTro2.chr5 50180989 71 - 183994906 TCTCCAATAAGTGGTTCCATGAACGAGGACAGGAGTTCTTGAGACCTTGTGGATCAACAGAAGTTGACTGA +s mm8.chr11 53974612 71 + 121798632 TCTCCAACAAGTGGTTCCATGAGCGAGGACAGGAGTTCTTAAGACCTTGTGGAACAACGGAAGTTGATTGA + +a score=291108.0 +s hg18.chr5 131621326 30 + 180857866 ATGCCCCATTCCGTGACCCTGCGCGGGCCT +s panTro2.chr5 133877364 30 + 183994906 ATGCCCCATTCCGTGACCCTGCGCGGGCCT +i panTro2.chr5 C 0 C 0 +s mm8.chr11 67886277 30 - 121798632 ATGACCCACTCGGTGACCCTGCGCGGCCCT +i mm8.chr11 C 0 C 0 + +a score=990690.0 +s hg18.chr5 131621356 63 + 180857866 TCGCCCTGGGGCTTCCGCCTGGTGGGCGGCCGGGACTTCAGCGCGCCCCTCACCATCTCACGG +s panTro2.chr5 133877394 63 + 183994906 TCGCCCTGGGGCTTCCGCCTGGTGGGCGGCCGGGACTTCAGCGCGCCCCTCACCATCTCACGG +i panTro2.chr5 C 0 C 0 +s mm8.chr11 67886307 63 - 121798632 TCACCCTGGGGCTTCCGCCTGGTGGGCGGCCGGGACTTCAGTGCTCCCCTCACCATCTCGCGG +i mm8.chr11 C 0 C 0 + +a score=519601.0 +s hg18.chr5 49010271 54 - 180857866 CTGCTGACCCCA---GTCCGGT---TGCCCTCCATCCAGGCCATTCCCTGTGCACCGTAG +s panTro2.chr5 49887369 54 - 183994906 CTGCTGACCCCA---GTCCGGT---TGCCCTCCATCCAGGCCATTCCCTGTGCACCGTAG +s mm8.chr11 53619809 60 + 121798632 CTGCTGGGCAACTCTGTGAGGCTGCCGCCCTCTATTCAGGCCATTCCTTGTGCACCATAG + +a score=431236.0 +s hg18.chr5 49010219 52 - 180857866 ACAGCGTGTCTTCACAGATCTGAAGAACATGGATGCCACC---TGGCTGGACAGC +s panTro2.chr5 49887317 52 - 183994906 ACAGCGTGTCTTCACAGATCTGAAGAACATGGATGCCACC---TGGCTGGACAGC +s mm8.chr11 53619754 55 + 121798632 ACAACATGTCTTCACGGAGATGAAGAATATGGACTCCATCATGTGGATGGACAGC + +a score=274608.0 +s hg18.chr5 49010200 19 - 180857866 GGGATATTGGGCTGAGTCT +s panTro2.chr5 49887298 19 - 183994906 GGGATATTGGGCTGAGTCT +s mm8.chr11 53619735 19 + 121798632 GGGACATTGGGATAGGCAT + +a score=3488854.0 +s hg18.chr6 62600248 144 - 170899992 TTGGAAGTTCATGAGGCTAAGCCTGTGCCAGAAAATCACCCACAGTGGGATACAGCAATAGAGGGGGATGAAGACCAGGAGGACAGTGAGGGCTTTGAAGATAGCTTTGAGGAAGAAGAGGAGGAAGAAGAAGATGATGACTAA +s panTro2.chr6 64206236 144 - 173908612 TTGGAAGTTCATGAGGCTAAGCCTGTGCCAGAAAATCACCCACAGTGGGATACAGCAATAGAGGGGGATGAAGACCAGGAGGACAGTGAGGGCTTTGAAGATAGCTTTGAGGAAGAAGAGGAGGAAGAAGATGATGATGACTAA +s mm8.chr10 42517305 144 + 129959148 TTGGAAGTTCATGAGGCCAAGCCTGTGCCAGAAAACCACCCACAGTGGGACACAGCGATAGAAGGTGACGAAGACCAGGAAGACAGTGAAGGATTTGAAGACAGCTTTGAGGAAGAGGAGGAGGAAGAGGAAGGTGGAGACTAA + +a score=673541.0 +s hg18.chr6 108594662 25 + 170899992 ATGAGCAAGCCAGCCGGATCAACAA +s panTro2.chr6 109997450 25 + 173908612 ATGAGCAAGCCAGCCGGATCAACAA +i panTro2.chr6 C 0 C 0 +s mm8.chr10 87687827 25 - 129959148 ATGAGCAAGCCCGCCGGATCAACAA +i mm8.chr10 C 0 C 0 + +a score=2387325.0 +s hg18.chr6 62259841 106 - 170899992 GGTCGCTGGTCATCCTCTGGCACAGAACGAACGTTGTCTTCACATGTTTTTACAAGATGAAATAATAGATAAAAGCTATACTCCATCTAAAATAAGACATGCCTGA +s panTro2.chr6 63864488 106 - 173908612 GGTCGCTGGTCATCCTCTGGCACAGAACGAACGTTGTCTTCACATGTTTTTACAAGATGAAATAATAGATAAAAGCTATACTCCATCTAAAATAAGACATGCCTGA +s mm8.chr10 42223067 106 + 129959148 GGTCGCTGGTCATCCTCTGGCCCAGAATGAACGTTGTCTTCACATGTTTTTACAGGATGAAATTATAGATAAAAGCTATACTCCATCTAAAATAAGACATGCCTGA + +a score=684735.0 +s hg18.chr6 108722976 80 + 170899992 ATGGCGGCCTCCTGGTCGCTCTTGGTTACCCTGCGCCCCTTAGCACAGAGCCCGCTGAGAGGGAGATGTGTTGGGTGCGG +s panTro2.chr6 110129713 80 + 173908612 ATGGCGGCCTCCTGGTCGCTCTTGGTTACCCTGCGCCCCTTAGCACAGAGCCCGCTGAGAGGGAGATGTGTTGGGTGCGG +i panTro2.chr6 C 0 C 0 +s mm8.chr10 87792332 80 - 129959148 ATGGCGGCCTCCTGGTCGCCCTTGGTTACTCTGCGCTCCGCCGCGCGCAGCCGGCTGACTGGGAGAGGTGTTGGGTGCGG +i mm8.chr10 C 0 C 0 + +a score=301881.0 +s hg18.chr6 108723056 59 + 170899992 GGCCTGGGCCGCCGCTCTCGCTCCTCTGGCCACCGCCCCTGGGAAGCCCTTTTGGAAAG +s panTro2.chr6 110129793 59 + 173908612 GGCCTGGGCCGCCGCTCTCGCTCCTCTGGCCACCGCCCCTGGGAAGCCCTTTTGGAAAG +i panTro2.chr6 C 0 C 0 +s mm8.chr10 87792412 59 - 129959148 GGCGCGGGTCGTCGCAATCCCTCCTCCGGCCCCTGGCCCTGGGAAACCCCTGTGGAAAG +i mm8.chr10 C 0 C 0 + +a score=77769.0 +s hg18.chr7 113660517 150 + 158821424 acaatatttttacatgtacaaaaggagtgtttaggattcctatagtgaaattaaataa--aaatagtatttcatcatttcatctttatcctctgcatttttactcttgtgtatgtcttatacaaaacagagtatataaaatatttaagtata +s panTro2.chr7 114366363 150 + 160261443 acaatatttttacatgtacaaaaggagcatttaggattcctatagtgaaattaaataa--aaatagtatttcatcatttcatctttatcctctgcatttttactgttgtgtatgtcttatacaaaacagagtatataaaatatttaagtata +i panTro2.chr7 C 0 C 0 +s mm8.chr6 15003289 119 + 149525685 TCAATA-TTTTGCAAGTTCAAAGG---TATTTTGCATTTATATAGCAAAGTTAAACTATTAA-----------------CATATCTGTACT------------TTTTGTATATGTCTGATATAGGACAGATGATATAAAATATTTAGGTTTA +i mm8.chr6 I 216 C 0 + +a score=225170.0 +s hg18.chr7 113660667 18 + 158821424 gtagcacttgtatataaa +s panTro2.chr7 114366513 18 + 160261443 gtagcacttgtatataaa +i panTro2.chr7 C 0 C 0 +s mm8.chr6 15003408 18 + 149525685 GCAGTGCTTTTATATAAA +i mm8.chr6 C 0 C 0 + +a score=109967.0 +s hg18.chr7 42309182 83 - 158821424 AA---ACAGAAAAAATGACAACCTAAAACTGATTTGCTCCTACCGCTTTTGAGAAAAGTAAAAACATAAAATATAATTTTATTCTC +s panTro2.chr7 42970029 83 - 160261443 AA---ACAGAAAAAATGATAACCTAAAACTGATTTGCTCCTACCGCTTTTGAGAAAAGTAAAAACATAAAATATAATTTTATTCTC +s mm8.chr6 131770695 82 - 149525685 CACTGAGGGGGAGGAGGACAACCTGAAATCCATTTGCTCTGATCAGATTTCATGAA----CGGAGATGAAATGTGTTTCTCTCCCA + +a score=102283.0 +s hg18.chr7 42309126 56 - 158821424 CACAGATAGACATA-CCAAATTACAGAGAACAGGTATCTACTGTTCTAAAAACCTGG +s panTro2.chr7 42969973 56 - 160261443 CACAGATAGACATA-CCAAATTACAGAGAACAGGTATCTACTGTTCTAAAAACCTGG +s mm8.chr6 131770639 56 - 149525685 CATAGGTGGGCACAGCCAAATGACAGAAGCTAAGAACCTATTGTTCTAAAA-CCAGC + +a score=19014.0 +s hg18.chr7 42309086 40 - 158821424 CTTTTCTTAGGAACAAGCGCCAGGACTGACTTAAGCATTA +s panTro2.chr7 42969933 40 - 160261443 CTTTTCTTAGGAACAAGCGCCAGGACTGACTTAAGCATTA +s mm8.chr6 131770600 39 - 149525685 GGTTTCTTAGGATCCATTACTGTGAAAGCTGC-TGCATGA + +a score=57850.0 +s hg18.chr7 42309063 23 - 158821424 ATATGTATTTGCCTCTTATTTTC +s mm8.chr6 131770575 23 - 149525685 GTATGTACCTGTCGCCCACTTCC +s panTro2.chr7 42969910 23 - 160261443 ATATGTATTTGCCTCTTATTTTC + +a score=41852.0 +s hg18.chr7 42309040 23 - 158821424 ATTCTTTTTCTTGTACAGAATCA +s panTro2.chr7 42969887 23 - 160261443 ATTCTTTTTCTTGTACAGAATCA +s mm8.chr6 131770552 23 - 149525685 CTTCTCCTGCTTTTACAGTGCGG + +a score=45100.0 +s hg18.chr7 42309035 5 - 158821424 CCTTT +s panTro2.chr7 42969882 5 - 160261443 CCTTT +s mm8.chr6 131770535 5 - 149525685 TAATT + +a score=1784527.0 +s hg18.chr7 116714099 53 + 158821424 T-------GTTTTCGTAAGTTGGAAAAGTTTGACTGGCACAGGAAAG-CATGTCCCATTAA +s panTro2.chr7 117499706 53 + 160261443 T-------GTTTTCATAAGTTGGAAAAGTTTGACTGGCACAGGAAAG-CATGTCCCATTAA +i panTro2.chr7 C 0 C 0 +s mm8.chr6 17948973 59 + 149525685 TTTTATTCATTTTCCTAGCTCAG--AGGTTTGACTGGCACAGGACAGCCAGGTCCTGTTAA +i mm8.chr6 C 0 C 0 + +a score=193794.0 +s hg18.chr7 41875637 246 - 158821424 T-CTATATATTTAAGTCTATGAAAGACATATATATACACATATGTATATGTtaataatatataatatagcctatta-----tatattataatcatatatataaattattatattatttatagtattatatatttatttagaataaatattactatattattatataacatatgttatatacaattataattataatatatattgtattatatattataataATGGGTTAGAGACATATATGTGACATATATA +s panTro2.chr7 42526447 252 - 160261443 TGCTATATATTTAAGTCTATGAAAGacatatatatacacatatgcatatattaataatatataatatagcctattatatattatattataatcatatatataaattattatattatttatagtgttatatgtttatttagaataaatattactatattattatataacatatgttatatacaattataattataatatatgttatattatatattataataataggttaGAGACATATATGTGACATATATA + +a score=4204045.0 +s hg18.chr8 27393549 146 - 146274826 CCCAGCGACAGAGCTGCATGAATACGTTTGCCAGCTGGTTTGGCTACATGCCGCTGATCCACTCTCAGATGAGGCTCGACCCCGTCCTCTTTAAAGACCAGGTCTCTATTTTGAGGAAGAAATACCGAGACATTGAGCGACTTTGA +s panTro2.chr8 27880503 146 - 145085868 CCCAGCGACAGAGCTGCATGAATACGTTTGCCAGCTGGTTTGGCTACATGCCGCTGATCCACTCTCAGATGAGGCTCGACCCCGTCCTCTTTAAAGACCAGGTCTCTATTTTGAGGAAGAAATACCGAGACATTGAGCGACTTTGA +s mm8.chr15 50593685 146 - 103492577 CCCAGCGACAGAGCTGCATGAATACATTTGCCAGCTGGTTTGGCTACATGCCGCTGATCCATTCTCAGATGAGGCTGGACCCGGTCCTCTTTAAAGACCAAGTCTCAATTCTGAGGAAGAAATACAGAGACATTGAACGACTTTGA + +a score=1001054.0 +s hg18.chr8 27393509 40 - 146274826 ACTTCTCGGGCTTCCCGTTGGGCTGACCCTGACCACTTTG +s panTro2.chr8 27880463 40 - 145085868 ACTTCTCGGGCTTCCCGTTGGGCTGACCCTGACCACTTTG +s mm8.chr15 50593645 40 - 103492577 ACTTCCCGAGCATCCCGCTGGGCCGACCCTGACCACTTTG + +a score=57001.0 +s hg18.chr9 128764156 6 + 140273252 catcaa +s panTro2.chr9 126736437 6 + 138509991 catcaa +i panTro2.chr9 C 0 C 0 +s mm8.chr2 148813766 6 - 181976762 CAGTAA +i mm8.chr2 C 0 C 0 + +a score=16385.0 +s hg18.chr9 128764162 27 + 140273252 actgtatctgtgggccatagttagcct-------------- +s panTro2.chr9 126736443 27 + 138509991 actgtatctgtgggccatagttagcct-------------- +i panTro2.chr9 C 0 C 0 +s mm8.chr2 148813772 31 - 181976762 ----------TGGCACAGGTACACCATTTTCCATGGAGGGA +i mm8.chr2 C 0 C 0 + +a score=76022.0 +s hg18.chr9 11485716 17 - 140273252 TTTTAcaa---gataatgta +s panTro2.chr9 11748557 17 - 138509991 TTTTACAA---GATAATGTA +s mm8.chr2 33142635 20 + 181976762 CTCTAAGAAATGACAATGGC + +a score=169894.0 +s hg18.chr9 11485632 84 - 140273252 aaatatataaatatCAAGGGAATTAAGTAACAACTCTATAATGTTATATTTGAATTGGAAAGATCAGTATTATATTAGTCAAAT +s panTro2.chr9 11748473 84 - 138509991 aaatatataaatatCAAGGGAATTAAGTAACAACTCTATAATGTTATATTTGAATTGGAAAGATCAGTATTATATTAGTCAAAT +s mm8.chr2 33142562 73 + 181976762 AAATACAAGAAAATCAAGATCCTTAGGGAACATCAGGATAAGGACAGGTAAGAGCTGGGAAGAGTGACT-----------CACC + +a score=100082.0 +s hg18.chr9 11485610 22 - 140273252 CCAAAATTGTCACTGtaaaata +s panTro2.chr9 11748451 22 - 138509991 CCAAAATTGTCACTGtaaaata +s mm8.chr2 33142540 22 + 181976762 CTAAAACTGCCATTGTCAAATA + +a score=31644.0 +s hg18.chr9 11485572 38 - 140273252 atG-----------ACGGGATAATAT----AAAGTAAG----TAATGTTGCTAGGAA +s panTro2.chr9 11748413 38 - 138509991 atG-----------ACGGGATAATAT----AAAGTAAG----TAATGTTGCTAGGAA +s mm8.chr2 33142484 56 + 181976762 GAGTGCACAGGCACGAGTTAGAACAACGCAGGAA-AAGTAACCAGTATTGTTAGGAA + +a score=59361.0 +s hg18.chr9 11485526 46 - 140273252 TAGTAGTAATATTCGtattattat---------------------ttttaaattattttacata----tat +s panTro2.chr9 11748367 46 - 138509991 TAGTAGTAATATTCGtattattat---------------------ttttaaattattttacata----tat +s mm8.chr2 33142413 71 + 181976762 TGACAATAATGGCCTTGCTATTTTAAAGCACCCAGCCCACCTCCACCCAGTGTGCATGCACATACATATGT + +a score=132295.0 +s hg18.chr9 11485487 39 - 140273252 TGCAAG---------AAAATGTTAAAATTTGACCAGCAGTCTACTGCT +s panTro2.chr9 11748328 39 - 138509991 TGCAAG---------AAAATGTTAAAATTTGACCAGCAGTCTACTGCT +s mm8.chr2 33142362 48 + 181976762 TGCAAACAGAACCACAAAGTGGGAAACTTGAACCTGCAGTCGGCCAGG + +a score=57825.0 +s hg18.chr9 11485468 19 - 140273252 AAGAAGTAAAAGAACTAAC +s panTro2.chr9 11748309 19 - 138509991 AAGAAGTAAAAGAACTAAC +s mm8.chr2 33142345 17 + 181976762 CAGAAGAAAGGGAAC--AC + +a score=350567.0 +s hg18.chr9 11485308 160 - 140273252 caggtactgGGATTACAACAGGGTATCTCAGTATGCAGACCCTCTAGAACCAAATTAGCATAACCCTCCTTTTCTGTCCTGGTGCTTCCAAAGACCTTTAAGGGAAAAGTCCAGGGGAGAGGCCC---ACT--TGGGTATGTAAGTAGTAGGAAAGAGAGAAGAC +s mm8.chr2 33142195 150 + 181976762 CAGGTACTGAGATTACACCAGGGCCTCTTGGAGTACAGACCTCC--------------AAAAACCAGCTGCCTGTGACCACCTTCTTCTGAAAACCT-TAGAGGCAAAGAAAAGATGGAAGGCCCAACCCATCAAGAGGTGTGAGAGGAAGGAGGGAGAGACAAC +s panTro2.chr9 11748149 160 - 138509991 caggtactgGGATTACAACAGGGTATCTCAGTATGCAGACCCTCTAGAACCAAATTAGCATAACCCTCCTTTTCTGTCCTGGTGCTTCCAAAGACCTTTAAGGGAAAAGTCCAGGGGAGAGGCCT---ACT--TGGGTATATAAGTAGTAGGAAAGAGAGAAGAC + +a score=-38935.0 +s hg18.chr9 11485292 16 - 140273252 attatgta-ctg-tgttc +s panTro2.chr9 11748133 16 - 138509991 attatgta-ctg-tgttc +s mm8.chr2 33142179 16 + 181976762 --TGAGCAGCTGCTACTC + +a score=73778.0 +s hg18.chr9 11485257 35 - 140273252 CATCCATTCACACtccactcattcaacaaatattt +s mm8.chr2 33142146 33 + 181976762 GTATTGGCCCTTCTCCACTCAG--GACAGATCCCC +s panTro2.chr9 11748098 35 - 138509991 CATCCATTCACACtccactcattcaacaaatattt + +a score=368197.0 +s hg18.chr9 11485084 173 - 140273252 GAATCTTCAAAAGGCTGAGCTCACCAGGAAATACCC-------TTGCTTTGCGGGAAGTGGTTACACCACAAAACAAGACACCCTGGTAATATCGCTCCTTTGGTTGGCACACGCCCTCGCTTGGCAGTGTGCCTAAACACAGCCAGATAATGTTCTGCTATGGCGCTTCCCCTTTCAGG +s panTro2.chr9 11747926 172 - 138509991 GAATCTTCAAAAGGCTGAGCTCACCAGGAAATACCC-------TTGCTTTGCGGGAAGTGGTTACACCAC-AAACAAGACACCCTGGTAATATCGCTCCTTTGGTTGGCACACCCCCTCGCTTGGCAGTGTGCCTAAACACAGCCAGATAATGTTCTGCTATGGCGCTTCCCCTTTCAGG +s mm8.chr2 33141997 149 + 181976762 AAATCTCCAAAAGGCTGAGCCCACCAGGCAAAACCCCTCTTTTTTTCTTTGGGAAAAGTGACCAC----------TGCGCACCCAGTAGACACTGCTCCT-GAGCTGTCCTGTCCTG--------------------AGTCAGTCAGAAAACACTGTGCCAAGATGCTTGCCCTCACTGG + +a score=735006.0 +s hg18.chr9 11484882 202 - 140273252 AGAGTCACCAGGGGACAGGGCAGTTATGGTTCCATATTTGTAACTTCCATTTTCCTTACTCTCTGCCAATCCTTAACTCACCGTCTGCCTGGCTTCCTCTAAGCCCTGAAATGATGTTCTTTGTGGTCCCCCTTGCAGAAACCAGCAGAAGTCATGAAAAGCCACAGCTCCACCCTCAGTTATCAACTGCATTTGGAAATGT +s panTro2.chr9 11747724 202 - 138509991 AGAGTCACCAGGGGACAGGGCAGTTATGGTTCCATATTTGTAACTTCCATTTTCCTTACTCTCTGCCAATCCTTAACTCACCGTCTGCCTGGCTTCCTCTAAGCCCTGAAATGATGTTCTTTGTGGTCCCCCTTGCAGAAACCAGCAGAAGTCATGAAAAGCCACAGCTCCACCCTCAGTTATCAACTGCATTTGGAAATGT +s mm8.chr2 33141834 163 + 181976762 -----TAGCAGGGATCAGCACAATCGTG-TCCCATGCTTGTGACCTCCACATTCCTTATACTCTGCCAGTCC------------------------TCCTGAGTCCTGGGATGAGGCG--CTGTGGTTACCCCA-CAGAGAAGAGCACAAGTCCTAGT--GCTACA-TTCCAGCCCCAGCTGTGGGAGCCACT---GAATTC + +a score=440472.0 +s hg18.chr9 11484776 106 - 140273252 GGGGTTCTAGGCCACAACTTGTAAGTTCAACACAGCTGTGAGATATTATGCTACAAAGCTATATCTGCATTAATACACCAATTTTTGATAAACTTGGTCACTCGTT +s panTro2.chr9 11747618 106 - 138509991 GGGGTTCTAGGCCACAACTTGTAAGTTCAACACAGCTGTGAGATATTATGCTACAAAGCTATATCTGCATTAATACACCAATTTTTGATAAACTTGGTCACTCGTT +s mm8.chr2 33141754 80 + 181976762 AG-------------------------CAGCCTAGCTATAAGCAGA-ATGCCACAGAATTACATGTACGTTAAGTTGCCAGCTCTTTATAAAACTGGTCACTTATT + +a score=157210.0 +s hg18.chr9 11484715 61 - 140273252 CCTGGCAGCCAGGAATCCACCCAGGAATCTACCCTGCAACCCAATCCACCACAGTGGCAAT +s mm8.chr2 33141702 52 + 181976762 CCTGGCAGGCAGGAGTCTAACCAGA------G-CTGTCACCCAGTT-ATCCAGGTC-CAAC +s panTro2.chr9 11747557 61 - 138509991 CCTGGCAGCCAGGAATCCACCCAGGAATCTACCCTGCAACCCAATCCACCACAGTGGCAAT + +a score=-50628.0 +s hg18.chr9 11484601 114 - 140273252 GTAAGGAGCTCTGGTAGAGACAAAACACCACCTTGAAAACATACCCTTTTAGAAGGCTGCTACCACCAGGACCTTCAGACAGACCTCCTTTACAATGCAGCCCTTGCCCCAAGC +s panTro2.chr9 11747443 114 - 138509991 GTAAGGAGCTCTGGTAGAGACAAAACACCACCTTGAAAACATACCCTTTTAGAAGGCTGCTACCACCAGGACCTTCAGACAGACCTCCTTTACAATGCAGCCCTTGCCCCGAGC +s mm8.chr2 33141592 110 + 181976762 GTAGGGAATACTG-TGGACACAAAATGCTATGCCAAAACATGCCAGGTCAAGCAGGATGCAGCCACCAGGACCCTCAAACAAAG-CCCTTCATGAGGTAGCGTCA--CCCGAGC + +a score=125989.0 +s hg18.chr9 11484506 95 - 140273252 ACAAAAACAGTTCTGACATTTAGACCAGCCTCTGAGACACTGCTGCGCCTTCAACTCCATAGGCTGGGAACTGGACATACTGACAGACAGATGTG +s panTro2.chr9 11747348 95 - 138509991 ACAAAAACAGTTCTGACATTTAGACCAGCCTCTGAGACACTGCTGCGCCTTCAACTCCATAGGCTGGGAACTGGACATACTGACAGACAGATGTG +s mm8.chr2 33141545 47 + 181976762 -----------------------------CTCTGAGGAGCTGTAGGAGCCTCCGTTCTGTG------------AGTATGA-------CAGACTTG + +a score=128122.0 +s hg18.chr9 11484395 111 - 140273252 AGCTCAGCTCTGACAGAACCCTGGGCTGAATAAAGCACAGGCTGTGCCCATTTTCAGCACATTCTAAGAACAGCAGTTTCCCCTTGATGCTGCTCCATGCTAAAACTAATG +s panTro2.chr9 11747237 111 - 138509991 AGCTCAGCTCTGACAGAACCCTGGGCTGAATAAAGCACAGGCTGTGCCCATTTTCAGCACATTCTAAGAACAGCAGTTTCCCCTTGATGCTGCTCCATGCTAAAACTAATG +s mm8.chr2 33141446 99 + 181976762 AGCTCAACTCTGATAGGGTCATGGGCTAAGTACAGCCAAGGCCATGTCCATTTCCAGCTCAGTTTGAGAACAG-AGATCCACCATGCTGGGGTCTGGTGC----------- + +a score=88798.0 +s hg18.chr9 11484289 106 - 140273252 acttgtcctaagtctccaagctag-aggggtgaggctgtgactcaacctcagcttcatcagatcaaagttcatgctcttCAAGCTGTGTGGCTTTAACAGACCCAGC +s panTro2.chr9 11747131 106 - 138509991 acttgtcctaagtctccaagctag-aggggtgaggctgcgactcaacctcagcttcatcagatcaaagttcatcctcttCAAGCTGTGTGGCTTTAACAGACCCAGC +s mm8.chr2 33141368 78 + 181976762 GT----CCAGCATC--TTAGCTGGGATGAGAGCAGCCACA-CCCAT-CCCAGCTCTGACAGAT-------------------GTTATATATAGTTATTAAGC--AGT + +a score=128280.0 +s hg18.chr9 11484174 115 - 140273252 gctttgtacaggcaccgcgctaagttcttacatgcccactgtaaggtaaaagc---------tatgacttccaccccccgccaactttacacatgagaaaatcaaggcataaagaaaatacatg +s panTro2.chr9 11747016 115 - 138509991 gctttgtacaggcaccgtactaagttcttacatgcccactgtaaggtaaaagc---------tatgatttccaccccccgccaactttacacatgagaaaatcaaggcataaagaaaatacatg +s mm8.chr2 33141283 85 + 181976762 ---------------------------CTGGGTAGCTGCTGTGAGTTcaaaacaaaacaaaacaaaaTCACATCTC-------CCAT---GCACAAGGAAACTATAAGATAATGAGTAAGGA-- + +a score=175099.0 +s hg18.chr9 11484116 58 - 140273252 ACAGTGCCTATTCAAACTATACATTGGTGAaatgatagccacgcatgactaggagctt +s panTro2.chr9 11746958 58 - 138509991 ACAGTGCCTATTCAAACTATACACTGGTGAaatgatagccacgcatgactaggagctt +s mm8.chr2 33141234 49 + 181976762 ACAGAGCCAGCTCAGACTGAGCAGCAG-----CAATAACCACAAATGACTGACA---- + +a score=294709.0 +s hg18.chr9 128882427 96 + 140273252 aacacattgcttgttgtaaaaattattcacactgaaaagaagtttataaagtaaaaagtgaatgtgccattcttcttctcccactttccagaggca +s panTro2.chr9 126860344 91 + 138509991 AACACATTGCTTGTTGTAAAAATTATTCACACT-----GAAGTTTATAAAGTAAAAAGTGAATGTGCCATTATTCTTCTCCCACTTTCCAGAGGCA +i panTro2.chr9 C 0 C 0 +s mm8.chr2 148901693 74 - 181976762 -------------CTGTGGAGATCATCCACATTACAAAGAAGTCTATAAAGTAAAATGTGAAAGT--CGCTCTGCCCCTCC-------CTCCGGCG +i mm8.chr2 C 0 C 0 + +a score=-107864.0 +s hg18.chr9 11336020 3 - 140273252 ACT +s panTro2.chr9 11593518 3 - 138509991 ACT +s mm8.chr2 33023385 3 + 181976762 ACT + +a score=-82513.0 +s hg18.chr9 11335985 35 - 140273252 ACGTGTCAATCTCCCTCCCCAAAGAGGGAGAGAGG +s panTro2.chr9 11593483 35 - 138509991 GCGTGTCAATCTCCCTCCCCAGAGAGGGAGAGAGG +s mm8.chr2 33023361 24 + 181976762 ---------TCTTCCTTCCC--ACCAGGAGGGAGG + +a score=80475.0 +s hg18.chr9 11335945 40 - 140273252 ACCAGTTTCTATGTTCAATGTGACCCAAACTCCAGGGGCT +s panTro2.chr9 11593443 40 - 138509991 ACCAGTTTCTATGTTCAATGTGACCCAAACTCCAGGAGCT +s mm8.chr2 33023351 10 + 181976762 GCCTGCCTCT------------------------------ + +a score=-9994.0 +s hg18.chr9 11335933 12 - 140273252 CTAGAA---------------------------ACAGCC +s panTro2.chr9 11593431 12 - 138509991 CTAGAA---------------------------ACAGCC +s mm8.chr2 33023313 38 + 181976762 -CAGAACAGTTTACGCTCCGTGAGACCTGCGGGCCAGCT + +a score=-18269.0 +s hg18.chr9 11335906 27 - 140273252 GAGTTTCTGCTTTCAGACATCTCTATA +s panTro2.chr9 11593404 27 - 138509991 GGGTTTCTGCTTTCAGAAATCTCTATA +s mm8.chr2 33023295 18 + 181976762 AAGCCTCTGCAG-CAGAAA-------- + +a score=163495.0 +s hg18.chr9 11335807 99 - 140273252 ATGTGGGCCCATCTTGCAAGGGCCACAGAGACAGGAATGAGAGGGTGGAGCCCACTTCTTCCCAGATACTCAAGTCCTTCCAAGGCCTTGTGACCCCAT +s panTro2.chr9 11593305 99 - 138509991 ATGTGGGCCCATCTTGCAAGGGCCACAGAGACAGGAATGAGAGGGTGGAGCCCACTTCTTCCCAGATACTCAAGTCCTTCCAAGGCCTTGTGACCCCAT +s mm8.chr2 33023200 95 + 181976762 ATCTTGGTCT-CCTGGCAAGACCACAGAGAATTAGATAGTGAGAATGGACCCCACCTCTTCTCAGCGACCCAAGTCCACT---GTCCTACAGGCTTCCA + +a score=100797.0 +s hg18.chrX 122745047 18 + 154913754 accatcaagaaagtaaaa +s panTro2.chrX 123190863 18 + 155361357 actatcaagaaagtaaaa +i panTro2.chrX C 0 I 759 + +a score=0.0 +s hg18.chrX 122745065 483 + 154913754 agacaacctacagaatgggagaaaatatttgcaaaccatatatctgacaagggacttttatctagaatgtataaccttaacattcaataatctttaaaaaaaaaaaagcccaatttgtttttttgtttttttttttgtttgttttttgttttttgtttttttttgagacggaggctcactctgtcacccaggctggagtgcagtggtgcgatctcagctcactgcaagctccgcctcccaggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcctgccaccacgcccagctaattttttgtatttttagtagagatggggtttcaccgtgttagccaggatggtctcgatctcctgacctcttgatctgcccaccttggcctcccaaagtgctgggattacaggtgagagccaccacgcccagccaaaaaaaaaagcccaattttcaaaaaggggcaaagggg + +a score=17937.0 +s hg18.chrX 122745548 189 + 154913754 ccgggcacggtggctcacgcctgtaatctcagcactttgggaggccaaggcagggggatcaggaggtcaggagttcgagaccagcctggccaaagcgaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccgggcatggtggcagtacctgtaatcccagctactcg +s panTro2.chrX 123191640 189 + 155361357 ccgggcacggtggctcacgcctgtaatctcagcactttgggaggccaaggcagggggatcaggaggtcaggagttcgagaccagcctggccaaagggaccagcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccgggcatggtggcagtacctgtaatcccagctactcg +i panTro2.chrX I 759 C 0 + +a score=88563.0 +s hg18.chrX 122745737 187 + 154913754 ggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagtaagctgagattgccccattgcactccagcctgggcaacagagtgagactcctactcaaaaaaaaaaaaaaaaaaaa-gttggcggatgcggggacagcaaagggcttaagtagacatttcttcaaagaagatatacaa +s panTro2.chrX 123191829 188 + 155361357 ggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcagtaagctgagattgccccattgcactccagcctgggcaacagagtgagactcctactcaaaaaaaaaaaaaaaaaaaaaGTTGGCAGATGCGGGGACAgcaaagggcttaagtagacatttcttcaaagaagatatacaa +i panTro2.chrX C 0 C 0 + +a score=60355.0 +s hg18.chrX 2264558 232 - 154913754 ctatctgggctcactgccagctccgcctcccgggttcacgccattcttctgcctcagcgtcccgagtagctgggactataggcgcccgccaccgcgcccggctaaatttttgtatttttagtagagatggggtttcaccctgttagccaggatggtctcgacctcctgacctcgtgatctgcccgcctcaccctcccaaagtgctgggatgccaggcgggagcccccgcgcc +s panTro2.chrX 2180049 232 - 155361357 ctctctgggctcactgccagctctgcctcccgggttcatgccattcttctgcctcagcgtcccgagtagctgggactacaggcgcccgcccccgcgcccggctaaatttttgtatttttagtagagatggggtttcaccctgttagccaggatggtctcgacctcctgacctcgtgatctgcccgcctcaccctcccaaagtgctgggattacaggcgtgagccaccgtgcc + +a score=-54866.0 +s hg18.chrX 152691446 7 + 154913754 TCAGAAC +s panTro2.chrX 153225439 7 + 155361357 TCAGAAC +i panTro2.chrX C 0 C 0 +s mm8.chrX 70018668 2 + 165556469 -----GC +i mm8.chrX C 0 C 0 + +a score=-88144.0 +s hg18.chrX 152691453 18 + 154913754 CGGAGGGCCTTGGGCATG +s mm8.chrX 70018670 18 + 165556469 TGGAGGGTCTTGAGGATG +i mm8.chrX C 0 C 0 +s panTro2.chrX 153225446 18 + 155361357 CGGAGGGCCTTGGGCATG +i panTro2.chrX C 0 C 0 + +a score=2270241.0 +s hg18.chrX 2219694 31 - 154913754 AGGCCAACCTGCGTAGCATGAGCTTGGGGTT +s panTro2.chrX 2133314 5 - 155361357 --------------------------GGGTT +s mm8.chrX 95535223 31 - 165556469 AGGCCAACCTGCGTAACATGAGCTTGGGGTT + +a score=-439513.0 +s hg18.chrX 2219662 32 - 154913754 AAGCCCTCACCCCCGCCACCGGGTCCAGGTCA +s mm8.chrX 95535191 32 - 165556469 AAGCCCCTGCCCCTGCCCCCACATTCAGGTCA + +a score=-528572.0 +s hg18.chrX 2219603 59 - 154913754 TGGCCCCACCCGCCCCTGGACAGAGCCCGCCCAGGGTGCGATGGGGGCAGGTCTGTGGC +s mm8.chrX 95535133 58 - 165556469 TGGCTCCTGAC-CTCAGGGCCTGATCCCACACCACCTGTATTAGCAATGGGTCAGAGGT + +a score=-746000.0 +s hg18.chrX 2219540 63 - 154913754 CTTTGTGCCTGTGTCCCTGCTGAGGACATCTCACTTTCCTTCCC--CCCACCTGCTGGGGCTTCC +s mm8.chrX 95535080 53 - 165556469 ------------GGCCCTGGTGAGGATAGTCCTCAGATCTTCTCTGAGCCCACTCCTGGAGTTCC + +a score=-199075.0 +s hg18.chrX 2219515 25 - 154913754 CGGGGAGCCGGCCACAGGGTCAGGC +s mm8.chrX 95535063 17 - 165556469 TATGGAAGAAGCCCCAA-------- + +a score=1368003.0 +s hg18.chrX 2219491 24 - 154913754 TTCTCCACCATGGTCTCTGTCCTG +s mm8.chrX 95535039 24 - 165556469 TTCTCTACCATGGTCTCCGTCCTG + diff -r e7b9d15e8e93 -r ff37fcf14bd5 tools/maf/interval2maf.py --- a/tools/maf/interval2maf.py Tue Sep 29 17:57:45 2009 -0400 +++ b/tools/maf/interval2maf.py Tue Sep 29 21:47:59 2009 -0400 @@ -80,6 +80,8 @@ split_blocks_by_species = True if options.remove_all_gap_columns and options.remove_all_gap_columns == 'remove_all_gap_columns': remove_all_gap_columns = True + else: + remove_all_gap_columns = True #Finish parsing command line #Open indexed access to MAFs @@ -113,6 +115,8 @@ for block in blocks: block = maf_utilities.chop_block_by_region( block, src, region ) if block is not None: + if species is not None: + block = block.limit_to_species( species ) block = maf_utilities.orient_block_by_region( block, src, region ) if remove_all_gap_columns: block.remove_all_gap_columns() diff -r e7b9d15e8e93 -r ff37fcf14bd5 tools/maf/interval2maf.xml --- a/tools/maf/interval2maf.xml Tue Sep 29 17:57:45 2009 -0400 +++ b/tools/maf/interval2maf.xml Tue Sep 29 21:47:59 2009 -0400 @@ -88,6 +88,14 @@ <param name="split_blocks_by_species" value="dont_split_blocks_by_species"/> <output name="out_file1" file="fsa_interval2maf.dat" /> </test> + <test> + <param name="input1" value="1.bed" dbkey="hg18" ftype="bed"/> + <param name="maf_source" value="cached"/> + <param name="mafType" value="28_WAY_MULTIZ_hg18"/> + <param name="species" value="hg18,panTro2,mm8"/> + <param name="split_blocks_by_species" value="dont_split_blocks_by_species"/> + <output name="out_file1" file="interval2maf_3from28way.maf" /> + </test> </tests> <help> **What it does**