On Wednesday, February 19, 2014, Peter Cock <p.j.a.cock@googlemail.com> wrote:
On Wed, Feb 19, 2014 at 2:16 PM, John Chilton <jmchilton@bx.psu.edu<javascript:;>> wrote:
Hey Peter,
Have you seen this solution?
https://wiki.galaxyproject.org/Admin/Tools/Multiple%20Output%20Files#Number_...
It always seems to get mentioned when this topic is brought up. It has serious limitations in terms or workflow running, but it can probably be made to work for individual tool executions.
Hmm. Any real life examples of this in use? I guess looking for the magic string $__new_file_path__ in the <command> tag is the only way to identify this?
Hi Peter, I used the current functionality here: http://toolshed.g2.bx.psu.edu/view/cjav/split_by_barcode The code for the underlining tool is available here: https://github.com/cjav/ngs-tools Hope it helps, Carlos