Hi Ashok,
You should not set the PYTHONPATH in supervisor.
That is indeed going to conflict with conda.
If you are using uwsgi you can use something like this:
[program:galaxy_web]
command = /bioinfo/guests/mvandenb/galaxy/.venv/bin/uwsgi --virtualenv /bioinfo/guests/mvandenb/galaxy/.venv --ini-paste /bioinfo/guests/mvandenb/gx/config/galaxy.ini --logdate
--master --processes 2 --threads 2 --logto /home/galaxy/galaxy/uwsgi.log --socket 127.0.0.1:4001 --pythonpath lib --stats 127.0.0.1:9191
directory = /bioinfo/guests/mvandenb/galaxy
umask = 022
autostart = true
autorestart = true
startsecs = 20
user = galaxy
environment = /bioinfo/guests/mvandenb/galaxy/.venv/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
numprocs = 1
stopsignal = INT
startretries = 15
Best,
Marius
Thanks John and Bjoern for your reply.Conda is working properly when i trigger it manually as a galaxy user. (example: $conda_prefix/conda install bwa -c bioconda)I tried to remove the conda_prefix directory and it was reinstalled after restarting the galaxy. But still I am getting the same issue when installing tools from the toolshed.I also tried updating the conda using "conda update conda" but didnt help.Do i have to adjust the PYTHONPATH in my supervisor configuration ?Regards,AshokOn Thu, Mar 2, 2017 at 10:14 PM, Björn Grüning <bjoern.gruening@gmail.com> wrote:Hi Ashok,
this seems to be a problem with your conda installation.
See for example here: https://github.com/conda/conda/issues/2463
Can you update your conda manually?
Cheers,
Bjoern
Am 02.03.2017 um 17:47 schrieb Ashok Varadharajan:
> ImportError: No module named conda.cli.main
--Thanks and Regards,Ashok Varadharajan
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