Dear Galaxians,

 

I am troubleshooting a problem with running EMBOSS infoseq on our local galaxy installation.  We are running EMBOSS 6.5.

 

There is a mismatch between the options Galaxy is passing to infoseq (-version), and what infoseq wants (-seqversion).  This breaks the tool.

 

While this would be easy to fix in this instance, I wonder if I should be using EMBOSS 5 (which is *really* old, mind you) instead of EMBOSS 6.  I suspect with EMBOSS 6 there may be a whole host of similar changes to be made.

 

Can anyone advise?

 

If it turns out that EMBOSS 5 is actually required, perhaps someone could update the relevant info on the Galaxy dependencies page, or at least point me to the place where it says this.

 

cheers,

Simon

 

 

Simon Guest

Senior UNIX Technical Consultant

AgResearch

 


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