On Thu, Aug 1, 2013 at 1:41 PM, Rodolfo Aramayo <raramayo@tamu.edu> wrote:
On Thu, Aug 1, 2013 at 6:49 AM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
On Thu, Aug 1, 2013 at 12:38 PM, Rodolfo Aramayo <raramayo@tamu.edu> wrote:
People,
I successfully installed NCBI_Blast_Plus from the toolshed The tool, however, failed to work giving the following error:
Fatal error: Exit code 255 () Error: NCBI C++ Exception: "/usr/local/galaxy/galaxy-dist/database/tmp/tmpwL5OFq/ncbi-blast-2.2.26+-src/c++/src/corelib/ncbiobj.cpp", line 689: Critical: ncbi::CObject::ThrowNullPointerException() - Attempt to access NULL pointer.
I've seen that kind of error from NCBI BLAST+ before - do you know which of the BLAST tools was this, and what the query was?
The repo was: repos/devteam/ncbi_blast_plus/9dabbfd73c8a/ncbi_blast_plus
The query was: Output from velvetoptimiser /repos/simon-gladman/velvet_optimiser/43c89d82a7d3/velvet_optimiser
OK, so this was a nucleotide FASTA file from an assembly, right? What were you searching with BLAST? e.g. BLASTN against NT, BLASTX against NR, etc.
How can I totally uninstall and re-install this tool?
Thanks
You seem to have found a bug in the Tool Shed, so thank you for reporting this.
You are welcome
But any ideas on how to properly uninstall and re-install the tool??
Hopefully Greg from the Galaxy team will be able to help with this. Peter