Hi Alexandre, the commit seems to be also in galaxy-dist now. Anyway, this command should do the trick: hg pull -b stable https://bitbucket.org/galaxy/galaxy-central I'd suggest you to use directly the stable branch of galaxy-central, which usually gets the hotfixes much faster than galaxy-dist. But that's just my personal opinion. Best, Nicola Il 15.01.2015 17:32 Alexandre Defelicibus ha scritto:
Hi Daniel, Thanks for the answer.
How can I update my Galaxy instance with this fix? The fix is on galaxy-central repository and I've cloned the galaxy-dist repository. Thanks a lot,
Alexandre
2015-01-14 18:29 GMT-02:00 Daniel Blankenberg :
Hi Alexandre,
Thanks for reporting this issue. We have committed a fix here https://bitbucket.org/galaxy/galaxy-central/commits/7fd6061e43d5/ [3] and it will be applied to additional releases soon. Please let know if you encounter additional issues. Thanks for using Galaxy, Dan
On Jan 14, 2015, at 1:40 PM, Alexandre Defelicibus wrote:
Hi all, I've updated a Galaxy server with the latest stable distribution "latest_2015.01.13" and now a I got an error:
cannot open galaxy.tools.wrappers.DatasetFilenameWrapper: No such file
The tool has a multiple select field: On the job
details, the select files on the multiple select (there are on my history already), are showed at the Job command line as follow:
python /home/alexandre/mestrado/protpred-galaxy/galaxy-dist/tools/analysis/dominance_ranking.py -i [, , , ]
The command on XML is:
dominance_ranking.py -i $input_pdbs
This tool was working fine before the update. Any ideas what Is going wrong? Thanks a lot, Alexandre --
Alexandre Defelicibus Mestrando em Bioengenharia Programa de Pós-Graduação em Bioengenharia
Universidade de São Paulo - USP
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Alexandre Defelicibus
Mestrando em Bioengenharia Programa de Pós-Graduação em Bioengenharia Universidade de São Paulo - USP
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