I am having the same issue. Has this question ever been answered?? Should hg_g1k_v37.fa be pulled down when you rsync??
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From: shenwiyn <shenwiyn@gmail.commailto:shenwiyn@gmail.com> Date: Wednesday, September 11, 2013 2:41 AM To: galaxy-dev <galaxy-dev@bx.psu.edumailto:galaxy-dev@bx.psu.edu> Subject: [galaxy-dev] 回复: Can not find hg_g1k_v37.fa.
Hi, Fortunately,I get the human_g1k_v37.fasta.gz in ftp://ftp.ncbi.nih.gov/1000genomes/ftp/technical/reference/ .
________________________________ shenwiyn
发件人: shenwiynmailto:shenwiyn@gmail.com 发送时间: 2013-09-05 10:03 收件人: galaxy-devmailto:galaxy-dev@bx.psu.edu 主题: Can not find hg_g1k_v37.fa. Hi everyone, I want to use the hg_g1k_v37.fa on my local Galaxy,but I can not find this data.When I use the command : rsync -avzP rsync://datacache.g2.bx.psu.edu/indexes/hg_g1k_v37/seq/hg_g1k_v37.fa the error occurred: receiving incremental file list rsync: link_stat "/hg_g1k_v37/seq/hg_g1k_v37.fa" (in indexes) failed: No such file or directory (2)
sent 4 bytes received 6 bytes 4.00 bytes/sec total size is 0 speedup is 0.00 rsync error: some files/attrs were not transferred (see previous errors) (code 23) at main.c(1532) [receiver=3.0.6]
Please any suggestions would be most welcome.
Thanks.
________________________________ shenwiyn