Peter, I've committed a fix for this in 9480:a80175a97194, and re-run the automated testing framework. However, as you will see, the test still reports an error. This is not due to an issue in your repository, but an problem on the Galaxy side, as described in the following trello card: https://trello.com/c/KdGX3hkh --Dave B. On 4/17/13 06:20:39.000, Peter Cock wrote:
On Wed, Apr 17, 2013 at 9:44 AM, Peter Cock <p.j.a.cock@googlemail.com <mailto:p.j.a.cock@googlemail.com>> wrote:
On Tue, Apr 16, 2013 at 9:42 PM, Greg Von Kuster <greg@bx.psu.edu <mailto:greg@bx.psu.edu>> wrote:
Hello Peter,
On Apr 15, 2013, at 11:04 AM, Peter Cock wrote:
The "View tool functional test results" option clearly lists failed tests, but it is not obvious if there were any successful tests. Could that be indicated somehow (e.g. five tests passed for tool xxx).
Here's a problem case, http://toolshed.g2.bx.psu.edu/view/peterjc/blastxml_to_top_descr
This has one unit test defined,
<tests> <test> <param name="blastxml_file" value="blastp_four_human_vs_rhodopsin.xml" ftype="blastxml" /> <param name="topN" value="3" /> <output name="tabular_file" file="blastp_four_human_vs_rhodopsin_top3.tabular" ftype="tabular" /> </test> </tests>
However, it is not shown via "View tool functional test results":
Tool functional test results Time tested: ~ 6 hours ago *Tool Shed environment*
Tool shed version: 9252:da2d6ee29f30 Tool shed database version: 17 Mercurial version: 2.2.3 *Galaxy environment*
Galaxy version: unknown Galaxy database version: unknown Architecture: x86_64 Operating system: Linux 3.0.0-1-amd64 Python version: 2.7.2+
i.e. No mention of the fact there was (presumably) one successful test.
Peter