On 4/15/11 12:16 PM, "Pieter Neerincx" <
pieter.neerincx@gmail.com> wrote:
> Hi,
>
> You're not alone with this request! Unfortunately I wasn't able to join the
> 2-day Galaxy Hackathon, but I heard from a colleague who just came back that
> this was one of the topics they worked on. At the end of the hackathon they
> had a working prototype:
>
>
https://wiki.nbic.nl/index.php/NBIC_Galaxy_Hackathon_project#Loop_over_files_i
> n_a_directory
>
> Since they had only 2 days, it will need some polish, but I heard this hack
> already made it into the development branch of Galaxy, so we may see something
> like this in the near future :)
>
> Cheers,
>
> Pi
>
> On Apr 15, 2011, at 4:28 PM, Dave Walton wrote:
>
>> I've essentially asked the same question of the list in the past and gotten
>> no real response.
>>
>> I have the same interest, but from a workflow perspective.
>>
>> * A module that allows me to select multiple datafiles (say fastq files)
>> * Then pass each data file to a separate instance of a workflow that runs
>> tophat and cufflinks
>> * then another module that takes the final outputs of each of the workflow
>> runs and sends them to a final module that merges results.
>>
>> I am attempting to implement something like this using the API, though the
>> API is still pretty green from my perspective.
>>
>> I think functionality like this built into the workflow editor would be a
>> great addition.
>>
>> Dave
>>
>> On Apr 15, 2011, at 8:14 AM, Leandro Hermida wrote:
>>
>>> Hi everyone,
>>>
>>> I was wondering what would be the way in Galaxy to program the following:
>>>
>>> - User clicks on a tool and form is displayed
>>> - They use a select multi menu in the form to pick lets say X multiple
>>> datasets from their history
>>> - When they click submit the tool launches X number of jobs in the history,
>>> on for each of the datasets selected.
>>>
>>> I have a common use case where users have to manually run the same tool over
>>> and over again with the same parameters for each dataset of interest in
>>> their history. I would be great to be able programmatically or otherwise
>>> with Galaxy to be able to use one form and multi select the datasets and
>>> then launch the parallel jobs in one go.
>>>
>>> regards,
>>> Leandro
>>>
>>> <ATT00001..txt>
>>
>>
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>
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