On Apr 26, 2012, at 12:49 PM, Todd Oakley wrote:

Sorry, I don't use the main Galaxy instance, I imagine I won't be able to reproduce the bug there anyway. Most of the tools I use are in-house for phylogenetics (we'll put them up on the tool shed in the next few weeks). I can ask a postdoc in my lab to try to export some histories, as he uses the main instance.

We can try to debug here. Can you point to a place to start looking (I haven't looked at the Galaxy code at all beyond universe.ini and tools)?

Thanks,

Todd

On 4/26/2012 5:41 AM, Jeremy Goecks wrote:
Hi Todd,

History export is a beta feature and hasn't been fully tested yet. We'll look into this, but it's difficult to diagnose a bug on a local instance. Can you reproduce on either our main or test server?

Thanks,

J.

On Apr 25, 2012, at 8:08 PM, Todd Oakley wrote:

Hello,
I'd am trying to export histories to upload to another galaxy instance.

For some histories, it works fine. However, for others, I get an error. When I turn on debug, I get the error pasted below. Any thoughts on what is the cause of "object has no attribute 'hid'"?

Thanks!
Todd

Server Error
Module paste.exceptions.errormiddleware:143 in __call__
>> app_iter = self.application(environ, start_response)
Module paste.debug.prints:98 in __call__
>> environ, self.app)
Module paste.wsgilib:539 in intercept_output
>> app_iter = application(environ, replacement_start_response)
Module paste.recursive:80 in __call__
>> return self.application(environ, start_response)
Module paste.httpexceptions:632 in __call__
>> return self.application(environ, start_response)
Module galaxy.web.framework.base:145 in __call__
>> body = method( trans, **kwargs )
Module galaxy.web.controllers.history:591 in export_archive
>> history_exp_tool.execute( trans, incoming = params, set_output_hid = True )
Module galaxy.tools:1276 in execute
>> return self.tool_action.execute( self, trans, incoming=incoming, set_output_hid=set_output_hid, history=history, **kwargs )
Module galaxy.tools.actions.history_imp_exp:103 in execute
>> include_deleted=incoming[ 'include_deleted' ] )
Module galaxy.tools.imp_exp:419 in setup_job
>> input_datasets = [ assoc.dataset.hid for assoc in job.input_datasets ]
AttributeError: 'NoneType' object has no attribute 'hid'

--

***************************************
Todd Oakley, Professor
Ecology Evolution and Marine Biology
University of California, Santa Barbara
Santa Barbara, CA 93106 USA
***************************************

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***************************************
Todd Oakley, Professor
Ecology Evolution and Marine Biology
University of California, Santa Barbara
Santa Barbara, CA 93106 USA
***************************************

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