I've been trying to get genomes into my local galaxy instance to use the "Fetch Sequences - Extract Genomic DNA" tool.  I've read plenty of posts about adding custom genomes but I'm just looking to download the standard genomes already included with Galaxy, ie. mm9, hg19, etc.

I've already run the updateucsc.sh which created the indexes however, I need to download the actual genome sequences and put them where Galaxy can find them.  I'm sure I'm missing a command somewhere.

Thanks for the help.

Dr. Will Dampier

Instructor, Drexel University
Assistant Director, Center for Integrated Bioinformatics, School of Biomedical Engineering and Health Systems, Bossone 714, Drexel University, 3143 Chestnut St, Philadelphia, PA 19104