Hi,
I have a Bioconductor package which depends on R 3.1.1 , so I think I cannot use the “setup_r_environment” trick.
I already got a tool_dependency.xml working that installs R 3.1.1 and the necessary Bioconductor packages using bioclite method (see attachment). Now my question is:
·
I would like to split up this into two steps as I don’t want to trigger the compilation of new R environment every time I when I need to just update the Bioconductor
package....the question is: how to do such things in general? How can I access the INSTALL_DIR of another tool from within another tool_dependency.xml? If I can do this, then my problem is solved.
Thanks!
Pieter Lukasse
Wageningen UR, Plant Research International
Department of Bioinformatics (Bioscience)
Wageningen Campus, Building 107, Droevendaalsesteeg 1, 6708 PB,
Wageningen, the Netherlands
T: +31-317481122;
M: +31-628189540;
skype: pieter.lukasse.wur