Hello list,

installing the dependency package_picard_1_136 results in the following error:

---

File "/beegfs/common/galaxy/home/galaxy-15.07/lib/tool_shed/galaxy_install/install_manager.py", line 142, in install_and_build_package_via_fabric

tool_dependency = self.install_and_build_package( tool_shed_repository, tool_dependency, actions_dict )

File "/beegfs/common/galaxy/home/galaxy-15.07/lib/tool_shed/galaxy_install/install_manager.py", line 100, in install_and_build_package

initial_download=True )

File "/beegfs/common/galaxy/home/galaxy-15.07/lib/tool_shed/galaxy_install/tool_dependencies/recipe/recipe_manager.py", line 32, in execute_step

initial_download=initial_download )

File "/beegfs/common/galaxy/home/galaxy-15.07/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py", line 685, in execute_step

checksums = self.get_dict_checksums( action_dict )

File "/beegfs/common/galaxy/home/galaxy-15.07/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py", line 223, in url_download

archive = CompressedFile( file_path )

File "/beegfs/common/galaxy/home/galaxy-15.07/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py", line 89, in extract

print "foo"

[Errno 2] No such file or directory: './database/tmp/tmp-toolshed-mtdBC1_TE/picard-tools-1.136/picard-tools-1.136/'

---

Checking the directory './database/tmp/tmp-toolshed-mtdBC1_TE/picard-tools-1.136' returns:

$ ls -a ./database/tmp/tmp-toolshed-mtdBC1_TE/picard-tools-1.136

. .. htsjdk-1.136.jar libIntelDeflater.so picard-lib.jar picard.jar

The same thing happens with 'package_picard_1_126_0', whereas 'package_picard_1_56_0' installs fine.

Is there an issue with '<source_directory>.</source_directory>' (in 126 and 136) vs '<source_directory>picard-tools-1.56</source_directory>'?

I changed this in my local xml but it had no effect.

Any ideas?

Sven