On 4 Aug 2010, at 20:18, James Taylor wrote:
Hi Simon,
The problem that was masking real exceptions when debug mode was *off* is now fixed in galaxy-central. Thus, you should see a real exception in the logs if you try again. If you test this, could you let us know what the exception is?
Since I'm running galaxy-dist at the moment can I selectively pull stuff from galaxy-central or should I set up a parallel install to debug this further? Cheers Simon.
It is very odd that you don't see any exception in the UI when debug is on. It might be occurring in an asynchronous request that is not visible or something else unusual.
Thanks James
-- jt
James Taylor Assistant Professor Department of Biology Department of Mathematics & Computer Science Emory University
On Aug 3, 2010, at 6:56 AM, simon andrews (BI) wrote:
Having gone back to a stock configuration this error went away. Having reapplied all of my changes one at a time the one which causes the problem is disabling debug mode in universe_wsgi.ini. If I add
debug = False
to the config (removing the original), then I get the error below. If I leave debugging on then the histories work again.
Simon.
-----Original Message----- From: galaxy-dev-bounces@lists.bx.psu.edu [mailto:galaxy-dev-bounces@lists.bx.psu.edu ] On Behalf Of simon andrews (BI) Sent: 30 July 2010 15:44 To: galaxy-dev@bx.psu.edu Subject: [galaxy-dev] Server error from history view
I'm making pretty good progress setting up our galaxy server, but have hit a snag. Since moving from an SQLite to a MySQL backend I'm getting an internal server error from the history panel on our galaxy instance. Running the galaxy server from a console gives me the following python traceback:
---------------------------------------- Exception happened during processing of request from ('127.0.0.1', 60795) Traceback (most recent call last): File "/usr/lib/python2.6/site-packages/paste/httpserver.py", line 1068, in process_request_in_thread self.finish_request(request, client_address) File "/usr/lib64/python2.6/SocketServer.py", line 320, in finish_request self.RequestHandlerClass(request, client_address, self) File "/usr/lib64/python2.6/SocketServer.py", line 615, in __init__ self.handle() File "/usr/lib/python2.6/site-packages/paste/httpserver.py", line 442, in handle BaseHTTPRequestHandler.handle(self) File "/usr/lib64/python2.6/BaseHTTPServer.py", line 329, in handle self.handle_one_request() File "/usr/lib/python2.6/site-packages/paste/httpserver.py", line 437, in handle_one_request self.wsgi_execute() File "/usr/lib/python2.6/site-packages/paste/httpserver.py", line 287, in wsgi_execute self.wsgi_start_response) File "/usr/lib/python2.6/site-packages/paste/urlmap.py", line 203, in __call__ return app(environ, start_response) File "/data/private/galaxy/galaxy_dist/lib/galaxy/web/framework/ middleware/xforwardedhost.py", line 21, in __call__ return self.app( environ, start_response ) File "/usr/lib/python2.6/site-packages/paste/deploy/config.py", line 164, in __call__ app_iter = self.application(environ, start_response) File "/usr/lib/python2.6/site-packages/paste/translogger.py", line 68, in __call__ return self.application(environ, replacement_start_response) File "/usr/lib/python2.6/site-packages/paste/exceptions/ errormiddleware.py", line 154, in __call__ exc_info) File "/usr/lib/python2.6/site-packages/paste/translogger.py", line 67, in replacement_start_response return start_response(status, headers) File "/usr/lib/python2.6/site-packages/paste/httpserver.py", line 166, in wsgi_start_response assert 0, "Attempt to set headers a second time w/o an exc_info" AssertionError: Attempt to set headers a second time w/o an exc_info ----------------------------------------
Any ideas?
Thanks
Simon.
_______________________________________________ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-dev
_______________________________________________ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-dev