Hi everybody,<div><br></div><div>I am getting troubles when I try running our galaxy instance as a daemon service in ubuntu, using the procedure provided by James Casbon and available in the /contrib galaxy directory (briefly, installing the galaxy.debian-init in the /etc/init.d directory)</div>
<div>Everything is OK, *except* that third party softwares that are installed in /bin of the galaxy home directory fail.</div><div>I suspect a problem of $PATH when the service is launched with the command :</div><div><div>
start-stop-daemon --chuid $USER --group $GROUP --start --make-pidfile \</div><div><span class="Apple-tab-span" style="white-space:pre">	</span>             --pidfile $PIDFILE --background --chdir $DIR --exec $PYTHON -- $OPTS;</div>
<div>in the James bash script.</div><div>However, R scripts for instance are run correctly.</div><div>Taking this observation into account, we added /home/galaxy/bin in the <span style="background-color:rgb(238,238,238);color:rgb(17,17,17);font-family:Consolas,&#39;Andale Mono&#39;,Monaco,Courier,&#39;Courier New&#39;,Verdana,sans-serif;font-size:0.857em;line-height:1.5em">/etc/environment</span></div>
<div>unfortunately without success.</div><div><br></div><div>Any advices for fixing this irritating bug is welcome !</div><div><br></div><div>Chris</div><div><br></div><br>
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