hi Greg,
I don't have that setting in my universe. Should I just add it?
The output of hg summary is (hg incoming doesn't show any
available updates):
parent: 12276:dc067a95261d tip
Added tag release_2014.02.10 for changeset 5e605ed6069f
branch: stable
commit: 22 modified, 1 deleted, 127 unknown
update: (current)
I currently have 125 packages from toolsheds. Is that considered
to be "many"? Most of them are the migrated tools and the devteam
mappers/gatk/tophat stuff.
Geert
On 03/25/2014 05:16 PM, Greg Von Kuster wrote:
Hello Geert,
Do you have a lot of repositories installed from the Tool
Shed into you Galaxy instance? if so, the time you're
experience may be due to loading the in-memory installed
repository registry. Using this registry is optional, but the
default configuration setting is to use it. You can set the
following to entry to False in your universe_wsgi.ini file and
restart your Galaxy server to see if that is the problem. This
registry is not currently used by anythin except to display the
set of dependent repositories that will be affected if a
repository is uninstalled. If this is ot what is causing the
slow statup, then I'm not sure where else to look.
#
Enable use of an in-memory registry with bi-directional
relationships
#
between repositories (i.e., in addition to lists of
dependencies for a
#
repository, keep an in-memory registry of dependent items for
each repository.
#manage_dependency_relationships
= True
Greg Von Kuster
Dear all,
I'm wondering if the following behaviour is normal. Since I
reinstalled the latest galaxy distribution, every restart
hangs/loads for up to 10 minutes at the following lines:
galaxy.model.migrate.check INFO 2014-03-25 15:56:57,965 At
database version 118
tool_shed.galaxy_install.migrate.check INFO 2014-03-25
15:56:58,477 At migrate_tools version 9
galaxy.config INFO 2014-03-25 15:56:58,694 Install database
targetting Galaxy's database configuration.
After several minutes of no heavy processing (cpu/database
is almost idle), the startup continues.
Best,
Geert
--
Geert Vandeweyer, Ph.D.
Department of Medical Genetics
University of Antwerp
Prins Boudewijnlaan 43
2650 Edegem
Belgium
Tel: +32 (0)3 275 97 56
E-mail: geert.vandeweyer@ua.ac.be
http://ua.ac.be/cognitivegenetics
http://www.linkedin.com/in/geertvandeweyer
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--
Geert Vandeweyer, Ph.D.
Department of Medical Genetics
University of Antwerp
Prins Boudewijnlaan 43
2650 Edegem
Belgium
Tel: +32 (0)3 275 97 56
E-mail: geert.vandeweyer@ua.ac.be
http://ua.ac.be/cognitivegenetics
http://www.linkedin.com/in/geertvandeweyer