Re: [galaxy-dev] Installation of 20130603 Galaxy image with MySQL fails

5 Jun 2013

      Hi Bjorn,

Currently seen
$ hg tip
changeset:   9850:cea3ddf6cdda
branch:      stable
tag:         tip
user:        Nate Coraor <nate@bx.psu.edu>
date:        Mon Jun 03 16:17:31 2013 -0400
summary:     Update tag for stable_2013.06.03

Removed galaxy-dist directory and rerun the hg clone command.

$ hg clone https://bitbucket.org/galaxy/galaxy-dist#stable
destination directory: galaxy-dist
requesting all changes
adding changesets
adding manifests
adding file changes
added 9851 changesets with 36400 changes to 7175 files
updating to branch stable
4132 files updated, 0 files merged, 0 files removed, 0 files unresolved

$ cd galaxy-dist
$ hg heads
changeset:   9850:cea3ddf6cdda
branch:      stable
tag:         tip
user:        Nate Coraor <nate@bx.psu.edu>
date:        Mon Jun 03 16:17:31 2013 -0400
summary:     Update tag for stable_2013.06.03

$ hg pull ; hg update stable
pulling from https://bitbucket.org/galaxy/galaxy-dist
searching for changes
no changes found
0 files updated, 0 files merged, 0 files removed, 0 files unresolved

Check the script/manage_db.py:
from galaxy import eggs
                                                  <----- No decorator line
eggs.require( "Tempita" )
eggs.require( "SQLAlchemy" )
eggs.require( "sqlalchemy_migrate" )

$ hg update tip
0 files updated, 0 files merged, 0 files removed, 0 files unresolved

$ hg heads
changeset:   9850:cea3ddf6cdda
branch:      stable
tag:         tip
user:        Nate Coraor <nate@bx.psu.edu>
date:        Mon Jun 03 16:17:31 2013 -0400
summary:     Update tag for stable_2013.06.03

$ hg update default
82 files updated, 0 files merged, 2 files removed, 0 files unresolved

$ hg heads
changeset:   9850:cea3ddf6cdda
branch:      stable
tag:         tip
user:        Nate Coraor <nate@bx.psu.edu>
date:        Mon Jun 03 16:17:31 2013 -0400
summary:     Update tag for stable_2013.06.03

script/manage_db.py still the same as above.

From:	Björn Grüning <bjoern.gruening@pharmazie.uni-freiburg.de>
To:	Linda Cham/Poughkeepsie/IBM@IBMUS
Cc:	Dannon Baker <dannon.baker@gmail.com>, Galaxy Dev
            <galaxy-dev@lists.bx.psu.edu>
Date:	06/05/2013 04:30 PM
Subject:	Re: [galaxy-dev] Installation of 20130603 Galaxy image with
            MySQL fails

Hi Linda,
...
Hi Dannon,
Thanks.  I tried to do the hg pull and update and hg tip but I do not
see the changes in my working directory.  So I added the one liner
eggs.require( "decorator" ) to scripts/manage_db.py.
Ran the sh manage_db.sh upgrade and get this error:
that is really strange. Can you show us what the output of hg tip is?
Do you mind to start with a fresh checkout and that particular change?

Thanks,
Björn