I've made a note on the Trello issue Ross filed for this,
https://trello.com/c/SqrjrnNg/986

On Wed, Aug 7, 2013 at 4:16 PM, Greg Von Kuster <greg@bx.psu.edu> wrote:

Hi Peter,

This is a known issue ( not a Tool Shed issue, but a Galaxy issue )
related to the Select list that gets automatically populated with the
"Select one" option.  You have to actually click the x" on this option
to eliminate it.  Again, this feature is inherited from Galaxy, so it's
not specific to the tool shed.  I haven't had time to track it down
and fix it since I'm under water with just the tool shed.

Greg Von Kuster


On Aug 7, 2013, at 11:12 AM, Peter Cock <p.j.a.cock@googlemail.com> wrote:

Hi Greg, Dave,

While logged into the Test Tool Shed as 'iuc', I just created
a new (empty) repository:
http://testtoolshed.g2.bx.psu.edu/view/iuc/package_blast_plus_2_2_26

See background discussion on this thread:
http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-August/015890.html

As 'iuc', I then tried to grant write access to myself ('peterjc')
and Bjoern ('bgruening') as we are both IUC members and
working on the Galaxy BLAST+ project:
https://github.com/peterjc/galaxy_blast

The default dummy entry "Select One" entry was still being
displayed. I clicked 'Grant Access' and got this error:

Internal Server Error
Galaxy was unable to sucessfully complete your request

URL: http://testtoolshed.g2.bx.psu.edu/repository/manage_repository?id=2f85dfc5735b60ae
Module galaxy.web.framework.middleware.error:149 in __call__

app_iter = self.application(environ, sr_checker)

Module paste.debug.prints:106 in __call__

environ, self.app)

Module paste.wsgilib:543 in intercept_output

app_iter = application(environ, replacement_start_response)

Module paste.recursive:84 in __call__

return self.application(environ, start_response)

Module paste.httpexceptions:633 in __call__

return self.application(environ, start_response)

Module galaxy.web.framework.base:132 in __call__

return self.handle_request( environ, start_response )

Module galaxy.web.framework.base:190 in handle_request

body = method( trans, **kwargs )

Module galaxy.web.framework:98 in decorator

return func( self, trans, *args, **kwargs )

Module galaxy.webapps.tool_shed.controllers.repository:2072 in manage_repository

user = trans.sa_session.query( trans.model.User ).get( trans.security.decode_id( user_id ) )

Module galaxy.web.security:60 in decode_id

return int( self.id_cipher.decrypt( obj_id.decode( 'hex' ) ).lstrip( "!" ) )

Module encodings.hex_codec:42 in hex_decode

output = binascii.a2b_hex(input)

TypeError: Non-hexadecimal digit found
extra data

full traceback

text version

This may be an intermittent problem due to load or other unpredictable
factors, reloading the page may address the problem.

--

I tried again but explicitly removed the dummy entry "Select One"
and it seemed to have worked.

I am running Firefox v22.0 on Mac OS X.

Regards,

Peter

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