Hi Matthias My job_conf.xml still has the old config of running upload locally, so it has a section <tools> <tool id="upload1" handler="handlers" destination="local"/> </tools> after the <destination> section. Are you using a proxy such as nginx with your Galaxy server? Thanks, Peter On Mon, 10 Jul 2017 at 11:50 Matthias Bernt <m.bernt@ufz.de> wrote:
Hi Peter,
FYI: just found on the galaxy documentation a paragraph that even recommends running upload on the cluster:
https://galaxyproject.org/admin/config/performance/cluster/
""" If your cluster nodes have Internet access (NAT is okay) and you want to run the data source tools (upload, ucsc, etc.) on the cluster (doing so is highly recommended), set new_file_path in galaxy.ini to a directory somewhere in your shared filesystem: """
Cheers, Matthias
On 10.07.2017 11:11, Matthias Bernt wrote:
Dear Peter,
my job_conf.xml is attached.
Best, Matthuas
On 08.07.2017 18:00, galaxy-dev-request@lists.galaxyproject.org wrote:
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Today's Topics:
1. Re: any introduce for how Mako and JavaScript work in galaxy? (Daniel Blankenberg) 2. Re: ustacks - bad interpreter (Björn Grüning) 3. Re: Improved DRMAAJobRunner (Peter van Heusden) (Matthias Bernt) 4. Re: Improved DRMAAJobRunner (Peter van Heusden) (Peter van Heusden)
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Message: 1 Date: Thu, 6 Jul 2017 22:36:27 -0400 From: Daniel Blankenberg <dan.blankenberg@gmail.com> To: Steven Shen <ishenweiyan@gmail.com> Cc: galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] any introduce for how Mako and JavaScript work in galaxy? Message-ID: <CAE9nRFg+Edj2=3+K=6+FZCxj5=hb4toGW+Lm++E+SD1+J2+vbw@mail.gmail.com
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Hi Steven,
For a quick first pass, have you taken a look at https://github.com/ galaxyproject/galaxy/blob/dev/client/README.md?
Thanks for using Galaxy,
Dan
On Thu, Jul 6, 2017 at 10:11 PM, Steven Shen <ishenweiyan@gmail.com> wrote:
Hi everyone,
I want to make some change for my local galaxy web, actually I can edit galaxy_path/static/scripts/bundled/*.js directly.
It seems mako templates are used for galaxy, as well as many JavaScript files, but I don't know how they work. So is there any introduce for how mako and JavaScript files working in galaxy?
Thank you very much.
Steven
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