Hi List,
I'm trying to write a test for Galaxy and it fails on the result of the test differing from the expected output. As the output of diff (below) lists nothing but local_file data, I'm assuming that the issue is that no output is being generated by the test.
The test config is a series of passed values, with the exception of one parameter, which is actually an entry pulled from a loc file directing my tool to the location of the file on disk (i.e. it's a identifier value). I'm not really sure what's happening,
but I'd appreciate any help or pointers.
Thanks,
Kipper
--- local_file
+++ history_data
@@ -1,100 +1,100 @@
-chr10 4522044
4522438
-chr10 5650896
5651310
-chr10 5772258
5772663
-chr10 9135867
9136467
-chr10 9946900
9947273
-chr10 10793689
10794313
-chr10 15790023
15790478
-chr10 16048435
16049028
-chr10 17620155
17620367
-chr10 21718404
21719020
-chr10 22967169
22967533
-chr10 22999383
22999802
-chr10 24511845
24512748
-chr10 24773636
24774006
-chr10 25975943
25976389
-chr10 26620032
26620396
-chr10 26907992
26908408
-chr10 28309833
28310034
-chr10 30908407
30909220
-chr10 31184776
31185151
-chr10 31191717
31192170
-chr10 31651098
31651551
-chr10 32422502
32422880
-chr10 33316453
33316817
-chr10 34353700
34354168
-chr10 34570612
34571026
-chr10 34853178
34853542
-chr10 34857471
34857818
-chr10 34994111
34994269
-chr10 38557788
38558691
-chr10 43296854
43297454
-chr10 44159102
44159480
-chr10 45208753
45209123
-chr10 45246414
45246794
-chr10 46861707
46862080
-chr10 47021051
47021457
-chr10 47716908
47717259