Hi Greg,
Thank you for your reply. I have checked on my tool_data_table_conf.xml.sample and tool_data_table_conf.xml files and they look to be correctly formatted with <tables> tags at their beginnings and ends.
However, I noticed that this file is already populated, should that be the case with a fresh newly installed Tool Shed?
My issue doesn't occur when I'm importing a tool from the Tool Shed to Galaxy, but when I'm uploading a tool that I've downloaded from the Galaxy Tool Shed to my Tool Shed.
The last of the errors reported after I attempt an upload being:
Module galaxy.util.shed_util:336 in
check_tool_input_params
>>
if options.tool_data_table
or options.missing_tool_data_table_name:
AttributeError: 'str' object has no attribute 'tool_data_table'
Many Thanks,
Adam.
-----Original Message-----
From: Greg Von Kuster [mailto:greg@bx.psu.edu]
Sent: 04 December 2012 16:40
To: Adam Carr (NBI)
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Main toolshed broken??
Hi Adam,
I believe this is related to the invalid xml definition in your repository's tool_data_table_conf.xml.sample file which I discussed in a previous reply.
Greg Von Kuster
On Dec 4, 2012, at 8:08 AM, Adam Carr (NBI) wrote:
> Hi,
>
> I hadn't caught this as I posted my query to the list, I'm having trouble uploading to a brand new repository. Could my issue described here:
http://dev.list.galaxyproject.org/Tool-Shed-Upload-Files-To-Repository-Crash-td4657324.html, be related?
>
> Many Thanks,
> Adam.
>
> ---
> Adam Carr
> Linux Support & Developmnent
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>
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>
>
> -----Original Message-----
>>
>> Hi list,
>>
>> Trying to upload, delete, update files from a repository I own in the toolshed I keep getting Server Error..
>>
>> This is the repo:
>>
http://fcaramia@.../repos/fcaramia/methylation_analysis_bismark
>>
>> Is anyone having the same issues?? I could just delete the repository but no option for that is given..
>>
>> Thanks,
>>
>> Franco
>>
>
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