Ok i did not saw it. I runned it with ./ and it worked fine. It gave me the same answer you gave me earlier. Olivier -----Message d'origine----- De : Peter Cock [mailto:p.j.a.cock@googlemail.com] Envoyé : vendredi 4 décembre 2015 12:40 À : Olivier CLAUDE <o.claude@outlook.fr> Cc : galaxy-dev@lists.galaxyproject.org Objet : Re: [galaxy-dev] wolfpsort On Fri, Dec 4, 2015 at 11:19 AM, Olivier CLAUDE <o.claude@outlook.fr> wrote:
Hi Peter, Thanks for all.
...
What happens if you try to do this:
$ cd /path/you/put/wolfpsort $ ./runWolfPsortSummary animal <~/repositories/pico_galaxy/test-data/four_human_proteins.fasta
It gives me :
olivier@LM1166 ~/galaxy/CBS/WoLFPSort-master/bin $ runWolfPsortSummary animal <~/galaxy/test-data/four_human_proteins.fasta sh: 1: /bin/checkFastaInput.pl: not found sh: 1: /bin/psortModifiedForWolfFiles/psortModifiedForWoLF: not found /home/paulh/cbrcRepos/C++/utils/argvParsing/ArgvParser.hh:291 Error opening file: "/bin/../data//animal.wolfw" Usage: /bin/wolfPredict [OPTIONS] weightFile trainingDataFile utilityMatrixFile
That's not what I meant, there is a small but important difference. Just runWolfPsortSummary will search the $PATH for runWolfPsortSummary script. I wanted you to use ./runWolfPsortSummary with a dot slash at the start which means look in the current director for the runWolfPsortSummary script. Please try: $ cd ~/galaxy/CBS/WoLFPSort-master/bin $ ./runWolfPsortSummary animal <~/galaxy/test-data/four_human_proteins.fasta Peter