On Wed, Apr 24, 2013 at 8:34 PM, Dave Bouvier <dave@bx.psu.edu> wrote:
Peter,
My recommendation would be to append or prepend the conditional name to each "use" parameter's name attribute, then specify the test parameters like:
<param name="useBackbone" value="false" />
There are good examples of how this is structured in tools/ngs_rna/cufflinks_wrapper.xml
--Dave B.
Hi Dave, I'd considered that workaround, but it would break any old workflows using the wrapper with the current parameter names. I regard this as a bug or limitation of the test framework, but if not, things are confusingly inconsistent. If you think parameter names should be unique, it would make the Cheetah commands a bit shorter as the wouldn't need the conditional-name-dot prefixes. Regards, Peter