Hello galaxy-dev gurus, 

I was trying to upgrade my galaxy server...

I removed the old galaxy-dist and ran 

     hg clone https://bitbucket.org/galaxy/galaxy-dist/

restored universe_wsgi.ini file and various tool-data config, and tried to restart galaxy.

After some twiddling, I see the error message at the end of this email.

The strangest thing I see is this

             /usr/prog/galaxy/galaxy-dist/eggs/drmaa-0.4b3-py2.6.egg/drmaa/wrappers.py

on my current system, drmaa-0.4b3-py2.6.egg is a file and not a directory... 

is the latest code that I just downloaded corrupted or something?

Much thanks in advance for your help in this matter.

-Tin

PS.  Relevant entry in universe_wsgi.ini on cluster config:

galaxy.tools.genome_index DEBUG 2013-05-24 08:42:49,150 Loaded genome index tool: __GENOME_INDEX__

galaxy.jobs.manager DEBUG 2013-05-24 08:42:49,153 Starting job handler

galaxy.jobs.runners DEBUG 2013-05-24 08:42:49,155 Starting 4 LocalRunner workers

galaxy.jobs DEBUG 2013-05-24 08:42:49,156 Loaded job runner 'galaxy.jobs.runners.local:LocalJobRunner' as 'local'

Traceback (most recent call last):

  File "/usr/prog/galaxy/galaxy-dist/lib/galaxy/webapps/galaxy/buildapp.py", line 35, in app_factory

    app = UniverseApplication( global_conf = global_conf, **kwargs )

  File "/usr/prog/galaxy/galaxy-dist/lib/galaxy/app.py", line 159, in __init__

    self.job_manager = manager.JobManager( self )

  File "/usr/prog/galaxy/galaxy-dist/lib/galaxy/jobs/manager.py", line 31, in __init__

    self.job_handler = handler.JobHandler( app )

  File "/usr/prog/galaxy/galaxy-dist/lib/galaxy/jobs/handler.py", line 29, in __init__

    self.dispatcher = DefaultJobDispatcher( app )

  File "/usr/prog/galaxy/galaxy-dist/lib/galaxy/jobs/handler.py", line 543, in __init__

    self.job_runners = self.app.job_config.get_job_runner_plugins()

  File "/usr/prog/galaxy/galaxy-dist/lib/galaxy/jobs/__init__.py", line 486, in get_job_runner_plugins

    rval[id] = runner_class( self.app, runner[ 'workers' ], **runner.get( 'kwds', {} ) )

  File "/usr/prog/galaxy/galaxy-dist/lib/galaxy/jobs/runners/drmaa.py", line 75, in __init__

    self.ds.initialize()

  File "/usr/prog/galaxy/galaxy-dist/eggs/drmaa-0.4b3-py2.6.egg/drmaa/__init__.py", line 274, in initialize

    _w.init(contactString)

  File "/usr/prog/galaxy/galaxy-dist/eggs/drmaa-0.4b3-py2.6.egg/drmaa/wrappers.py", line 59, in init

    return _lib.drmaa_init(contact, error_buffer, sizeof(error_buffer))

  File "/usr/prog/galaxy/galaxy-dist/eggs/drmaa-0.4b3-py2.6.egg/drmaa/errors.py", line 90, in error_check

    raise _ERRORS[code-1]("code %s: %s" % (code, error_buffer.value))

DrmCommunicationException: code 2: range_list containes no elements