Hi Bjoern, Please see my comments inline. On Thu, Apr 3, 2014 at 3:14 PM, Björn Grüning <bjoern.gruening@gmail.com>wrote:
Hi Janaki,
can you try to remove this prior_installation_required completely?
I didn't added 'prior_installation_required' in the repository_dependencies.xml(as this is optional), it got added when I exported repository files from tool shed. Actual repository_dependencies.xml file has below content. <?xml version="1.0"?> <repositories description="test description"> <repository name="string_occurrence" owner="janakiram-t1" /> </repositories>
Also why do you need a repository dependency, I think that is not needed or?
This is the first time I working with repository dependencies, so for testing I am trying to add simple repository dependency to my custom tool.
Cheers, Bjoern
Am 03.04.2014 09:30, schrieb Janaki Rama Rao Gollapudi:
Hi Bjoern,
I also exported both the repositories from local toolshed. Please find the attached files.
Thanks, JanakiRam
On Thu, Apr 3, 2014 at 12:50 PM, Janaki Rama Rao Gollapudi < janakiram.gollapudi@india.semanticbits.com> wrote:
Hi,
Thanks for quick reply. Please find the attached .tar file of both the repositories.
Thanks, JanakiRam
On Thu, Apr 3, 2014 at 12:45 PM, Björn Grüning < bjoern.gruening@gmail.com>wrote:
This all seems to be fine, can you send me a tarball with both
repositories ...
Thanks, Bjoern
Am 03.04.2014 09:05, schrieb Janaki Rama Rao Gollapudi:
Hi,
Did anyone faced this issue ?. I struck here. Please suggest me.
Thanks, JanakiRam
On Wed, Apr 2, 2014 at 3:10 PM, Janaki Rama Rao Gollapudi < janakiram.gollapudi@india.semanticbits.com> wrote:
Hi,
I have implemented a custom tool called 'barcode-parse' and uploaded this custom to into my local tool shed(which is running at http://localhost:9009). Also able to install this custom tool from galaxy.
Then I have added simple repository dependency. I have created a xml file 'repository_dependencies.xml'. Then I created a new repository in the toolShed called 'Test' and uploaded all necessary files(.py, definition xml file and repository dependency xml file) into this repository. (I have created another repository called 'string_occurrence' and uploaded necessary files into toolShed which is used as dependency repository)
<?xml version="1.0"?> <repositories description=""> <repository toolshed="http://localhost:9009" name="string_occurrence" owner="janakiram-t1" /> </repositories>
I tried to install custom tool 'barcode-parse' from galaxy, but I got below error message.
The repository dependency definitions for this repository are invalid and will be ignored.
I followed the steps mentioned in the galaxy wiki<https://wiki. galaxyproject.org/SimpleRepositoryDependencies>
Am I doing anything wrong? Please suggest me on this.
Thanks, JanakiRam
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