On Tue Feb 17 2015 at 2:50:15 PM Nicholas Kline <nxk60@case.edu> wrote:

Hi Dannon,

Thanks for the reply. So I went ahead and verified a few things, as
you requested:

1. config files:

/home/galaxy/galaxy-dist/config/galaxy.ini.sample
/home/galaxy/galaxy-dist/universe_wsgi.ini

I have only been working with universe_wsgi.ini

2. static_enabled

The content of that line looks exactly as follows:

static_enabled = False

3. I also verified that it exists in the [app:main] section of universe_wsgi.ini

I would be willing to post my nginx and universe_wsgi.ini configs,
preferably in private, if that would be helpful with troubleshooting.
Thanks for your help!

On Tue, Feb 17, 2015 at 11:27 AM, Dannon Baker <dannon.baker@gmail.com> wrote:
> Hi Nicholas,
>
> Odd, I see you're using universe_wsgi.ini. Can you confirm that no
> <galaxy_dir>/config/galaxy.ini file exists? These configurations were
> migrated a little while ago, and if you have multiple configuration files
> that might explain why we're seeing this error.
>
> Other than that, when you set static_enabled = False in your configuration
> file, you uncommented the existing line, right? That is, this entry in the
> config file is still in the [app:main] section?
>
> -Dannon
>
> On Mon Feb 16 2015 at 2:10:14 PM Nicholas Kline <nxk60@case.edu> wrote:
>>
>> Hi Nate,
>>
>> So I went ahead and set `static_enabled = False` in universe_wsgi.ini,
>> restarted uWSGI, and browsed to localhost. I'm including the results
>> of each step below:
>>
>> After restarting uWSGI, the last few lines of uwsgi.log looked like this:
>>
>> WSGI app 0 (mountpoint='') ready in 11 seconds on interpreter
>> 0xa934c0 pid: 3561 (default app)
>> *** uWSGI is running in multiple interpreter mode ***
>> spawned uWSGI master process (pid: 3561)
>> spawned uWSGI worker 1 (pid: 3575, cores: 4)
>> spawned uWSGI worker 2 (pid: 3576, cores: 4)
>> spawned uWSGI worker 3 (pid: 3583, cores: 4)
>> spawned uWSGI worker 4 (pid: 3587, cores: 4)
>> spawned uWSGI worker 5 (pid: 3591, cores: 4)
>> spawned uWSGI worker 6 (pid: 3595, cores: 4)
>> spawned uWSGI worker 7 (pid: 3599, cores: 4)
>> spawned uWSGI worker 8 (pid: 3603, cores: 4)
>> spawned uWSGI worker 9 (pid: 3607, cores: 4)
>> spawned uWSGI worker 10 (pid: 3611, cores: 4)
>> *** Stats server enabled on 127.0.0.1:9191 fd: 30 ***
>>
>> ...so no traceback this time!
>>
>> Then, browsing to localhost redirects to https://localhost and finally
>> returns:
>>
>> "Internal Server Error Galaxy was unable to successfully complete
>> your request An error occurred. This may be an intermittent problem
>> due to load or other
>> unpredictable factors, reloading the page may address the problem. The
>> error has been logged to our team."
>>
>> That request was logged to uwsgi.log:
>>
>> 127.0.0.1 - - [03/Feb/2015:14:51:01 -0400] "GET / HTTP/1.1" 500 -
>> "-" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:35.0) Gecko/20100101
>> Firefox/35.0"
>> Error - <type 'exceptions.KeyError'>: 'SCRIPT_NAME'
>> URL: https://localhost/
>> File 'lib/galaxy/web/framework/middleware/error.py', line 149 in
>> __call__
>> app_iter = self.application(environ, sr_checker)
>> File
>> '/home/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/recursive.py',
>> line 84 in __call__
>> return self.application(environ, start_response)
>> File
>> '/home/galaxy/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpexceptions.py',
>> line 633 in __call__
>> return self.application(environ, start_response)
>> File 'lib/galaxy/web/framework/base.py', line 132 in __call__
>> return self.handle_request( environ, start_response )
>> File 'lib/galaxy/web/framework/base.py', line 159 in handle_request
>> trans = self.transaction_factory( environ )
>> File 'lib/galaxy/web/framework/webapp.py', line 71 in <lambda>
>> self.set_transaction_factory( lambda e:
>> self.transaction_chooser( e, galaxy_app, session_cookie ) )
>> File 'lib/galaxy/web/framework/webapp.py', line 102 in
>> transaction_chooser
>> return GalaxyWebTransaction( environ, galaxy_app, self,
>> session_cookie )
>> File 'lib/galaxy/web/framework/webapp.py', line 207 in __init__
>> self._ensure_logged_in_user( environ, session_cookie )
>> File 'lib/galaxy/web/framework/webapp.py', line 441 in
>> _ensure_logged_in_user
>> if self.request.path.startswith( external_display_path ):
>> File 'lib/galaxy/web/framework/base.py', line 258 in __get__
>> value = self.func( obj )
>> File 'lib/galaxy/web/framework/base.py', line 341 in path
>> return self.environ['SCRIPT_NAME'] + self.environ['PATH_INFO']
>> KeyError: 'SCRIPT_NAME'
>>
>>
>> CGI Variables
>> -------------
>> DOCUMENT_ROOT: '/usr/share/nginx/html'
>> HTTP_ACCEPT:
>> 'text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8'
>> HTTP_ACCEPT_ENCODING: 'gzip, deflate'
>> HTTP_ACCEPT_LANGUAGE: 'en-US,en;q=0.5'
>> HTTP_CONNECTION: 'keep-alive'
>> HTTP_HOST: 'localhost'
>> HTTP_USER_AGENT: 'Mozilla/5.0 (X11; Ubuntu; Linux x86_64;
>> rv:35.0) Gecko/20100101 Firefox/35.0'
>> PATH_INFO: '/'
>> REMOTE_ADDR: '127.0.0.1'
>> REMOTE_PORT: '50064'
>> REQUEST_METHOD: 'GET'
>> REQUEST_URI: '/'
>> SERVER_NAME: 'localhost'
>> SERVER_PORT: '443'
>> SERVER_PROTOCOL: 'HTTP/1.1'
>> UWSGI_SCHEME: 'https'
>>
>>
>> WSGI Variables
>> --------------
>> application: <paste.recursive.RecursiveMiddleware object at
>> 0x7f2ec2f32290>
>> is_api_request: False
>> paste.cookies: (<SimpleCookie: >, '')
>> paste.expected_exceptions: [<class
>> 'paste.httpexceptions.HTTPException'>]
>> paste.httpexceptions: <paste.httpexceptions.HTTPExceptionHandler
>> object at 0x7f2ec2f32210>
>> paste.recursive.forward: <paste.recursive.Forwarder from />
>> paste.recursive.include: <paste.recursive.Includer from />
>> paste.recursive.include_app_iter: <paste.recursive.IncluderAppIter
>> from />
>> paste.recursive.script_name: ''
>> paste.throw_errors: True
>> request_id: 'fadecee2abdd11e4bfb614feb5e02dd6'
>> uwsgi.core: 0
>> uwsgi.node: 'i changed this string to hide the server name'
>> uwsgi.version: '2.0.9'
>> wsgi process: 'Multi process AND threads (?)'
>> wsgi.file_wrapper: <built-in function uwsgi_sendfile>
>> ------------------------------------------------------------
>> [pid: 3607|app: 0|req: 1/1] 127.0.0.1 () {40 vars in 593 bytes}
>> [Tue Feb 3 14:51:01 2015] GET / => generated 777 bytes in 230 msecs
>> (HTTP/1.1 500) 1 headers in 63 bytes (1 switches on core 0)
>>
>>
>> I thought I would include some pieces of universe_wsgi.ini to help
>> with troubleshooting:
>>
>> # ---- HTTP Server
>> ----------------------------------------------------------
>>
>> # Configuration of the internal HTTP server.
>>
>> [server:main]
>>
>> # The internal HTTP server to use. Currently only Paste is provided.
>> This
>> # option is required.
>> use = egg:Paste#http
>>
>> # The port on which to listen.
>> #port = 8080
>>
>> # The address on which to listen. By default, only listen to
>> localhost (Galaxy
>> # will not be accessible over the network). Use '0.0.0.0' to listen
>> on all
>> # available network interfaces.
>> host = 0.0.0.0
>>
>> # Use a threadpool for the web server instead of creating a thread for
>> each
>> # request.
>> use_threadpool = True
>>
>> # Number of threads in the web server thread pool.
>> threadpool_workers = 10
>>
>> # Set the number of seconds a thread can work before you should
>> kill it (assuming it will never finish) to 3 hours.
>> threadpool_kill_thread_limit = 10800
>>
>>
>> # ---- uwsgi
>> ----------------------------------------------------------
>>
>> [uwsgi]
>> processes = 10
>> stats = 127.0.0.1:9191
>> socket = 127.0.0.1:4001
>> pythonpath = lib
>> threads = 4
>> logto = /home/galaxy/galaxy-dist/uwsgi.log
>> master = True
>>
>> Also, we are using a self-signed certificate as a temporary solution,
>> so not sure if that matters.
>>
>> Thanks!
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