On Wed, Nov 10, 2010 at 4:40 PM, Peter <biopython@maubp.freeserve.co.uk> wrote:
Hi again,
I've done a matching enhancement to the FASTQ-to-tabular tool, with a new unit test - again on the same branch.
http://bitbucket.org/peterjc/galaxy-central/changeset/52d50566f4af http://bitbucket.org/peterjc/galaxy-central/changeset/8bf1e0b14e4b
Peter
Hi all, I guess you are probably busy with the planned galaxy-dist release at the moment, but could someone take a look at these proposed changes to the FASTA to tabular and FASTQ to tabular scripts? http://bitbucket.org/peterjc/galaxy-central/src/tabular i.e. For FASTA to tabular: http://bitbucket.org/peterjc/galaxy-central/changeset/181614e79ccb http://bitbucket.org/peterjc/galaxy-central/changeset/d2fd2defa692 then for FASTQ to tabular: http://bitbucket.org/peterjc/galaxy-central/changeset/52d50566f4af http://bitbucket.org/peterjc/galaxy-central/changeset/8bf1e0b14e4b I'm happy to make changes if you feel anything needs changing for integration. This enhancement (or another workaround like my proposed FASTA filter by ID script) is something I need for some in-house workflows doing classification of proteins from FASTA files. Thanks, Peter