Just following up on this. So it's ok to do all of my customizations in /mnt/galaxyData? Or am I doing something wrong, and I need to figure out how to boot up into a version that has /mnt/galaxy? Thanks again, Greg On Fri, Dec 20, 2013 at 2:49 PM, greg <margeemail@gmail.com> wrote:
Yes, I just launched it a few hours ago.
I just went here and filled out the form: https://usegalaxy.org/cloudlaunch
I chose "data cluster" when prompted and enter 5GB.
On Fri, Dec 20, 2013 at 2:48 PM, Dannon Baker <dannon.baker@gmail.com> wrote:
And is this a new instance you've just launched? If so, how'd you launch it?
On Fri, Dec 20, 2013 at 2:37 PM, greg <margeemail@gmail.com> wrote:
Here's what I'm seeing:
ubuntu@ip-10-182-195-79:/$ ls / bin boot dev etc export home initrd.img lib lib64 lost+found media mnt opt proc root run sbin selinux srv sys tmp usr var vmlinuz ubuntu@ip-10-182-195-79:/$ ls mnt cm galaxyData lost+found transient_nfs ubuntu@ip-10-182-195-79:/$ ls /mnt/galaxyData/ export files tmp upload_store
On Fri, Dec 20, 2013 at 2:20 PM, Dannon Baker <dannon.baker@gmail.com> wrote:
Does /mnt/galaxy exist, and does it have all of the expected galaxy components? /mnt/galaxyData might exist, but it should be either empty or a symlink to /mnt/galaxy if I remember correctly.
If you're launching your cluster from usegalaxy.org/cloudlaunch, you should always be using the latest stuff.
On Fri, Dec 20, 2013 at 2:13 PM, greg <margeemail@gmail.com> wrote:
Thanks. I was wrong before. I actually do see a /mnt/galaxyData.
Should I not being seeing that? Am I not on cloudman 2.0?
-Greg
On Fri, Dec 20, 2013 at 1:57 PM, Dannon Baker <dannon.baker@gmail.com> wrote:
With the Cloudman 2.0 release, the galaxyData and galaxyTools volumes have been merged to a single 'galaxy' volume. /mnt/galaxy is now your single persistent (by default, at least) volume, so, if you install your tool to here and share everything should work as expected.
-Dannon
On Fri, Dec 20, 2013 at 1:53 PM, greg <margeemail@gmail.com> wrote: > > Hi guys, > > I just launched an instance from https://usegalaxy.org/cloudlaunch > and > chose "data cluster" when prompted. > > Everything seems to have gone ok, but when I ssh in, I don't see > /mnt/galaxyData > > > Background: > > Basically we have a bioinformatics tool that needs SGE to run. So I > want to install it on a galaxy cloud instance and then provide the > share string to other researchers. > > I did this successfully a year or two ago by installing it to > /mnt/galaxyData. > > Thanks, > > Greg > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/