Hi All,

Thanks for the suggestions. I installed the Toolshed ( Differential_Count (version 0.21) ). It asks for the input matrix - rows are contigs, columns are counts for each sample.

Any idea on how to generate this matrix file??

Thanks

On Tue, Aug 20, 2013 at 12:53 PM, Mahtab Mirmomeni <m.mirmomeni@student.unimelb.edu.au> wrote:

Hi Sridhar,

I'm using differential_count_model repository by fubar in the test toolshed which has both EdgeR and Deseq2 and it's working for me.

Thanks

Mahtab

On Tue, Aug 20, 2013 at 5:03 PM, Bjoern Gruening <bjoern.gruening@gmail.com> wrote:

Hi Sridhar,

we are developing a DESeq2 tool at the moment, if you want to join get
in touch with me. Its developed here:

https://github.com/bgruening/galaxytools/tree/master/deseq2

I will upload our latest progress during the day.
Cheers,
Bjoern

> Dear users,
>
>
> Could anybody suggest the valid DESeq toolshed for RNA sequencing???
>
>
> Thanks
> Sridhar
>

> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>   http://lists.bx.psu.edu/
>
> To search Galaxy mailing lists use the unified search at:
>   http://galaxyproject.org/search/mailinglists/



___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/