On Fri, Sep 14, 2012 at 11:58 AM, Paul Tanger <paul.tanger@colostate.edu> wrote:

Not sure if this is what you need, but here is the info from the error page. I obscured part of the IP address.

URL: http://129.XX.XX.XX:8888/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=f2db41e1fa331b3e
File '/home/galaxy/galaxy-dist/eggs/WebError-0.8a-py2.6.egg/weberror/evalexception/middleware.py', line 364 in respond
app_iter = self.application(environ, detect_start_response)
File '/home/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/debug/prints.py', line 98 in __call__
environ, self.app)
File '/home/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/wsgilib.py', line 539 in intercept_output
app_iter = application(environ, replacement_start_response)
File '/home/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/recursive.py', line 80 in __call__
return self.application(environ, start_response)
File '/home/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py', line 632 in __call__
return self.application(environ, start_response)
File '/home/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 160 in __call__
body = method( trans, **kwargs )
File '/home/galaxy/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 184 in decorator
return func( self, trans, *args, **kwargs )
File '/home/galaxy/galaxy-dist/lib/galaxy/web/controllers/admin_toolshed.py', line 350 in browse_repositories
return self.reselect_tool_panel_section( trans, **kwd )
File '/home/galaxy/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 184 in decorator
return func( self, trans, *args, **kwargs )
File '/home/galaxy/galaxy-dist/lib/galaxy/web/controllers/admin_toolshed.py', line 1352 in reselect_tool_panel_section
status=status )
File '/home/galaxy/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 746 in fill_template
return self.fill_template_mako( filename, **kwargs )
File '/home/galaxy/galaxy-dist/lib/galaxy/web/framework/__init__.py', line 757 in fill_template_mako
return template.render( **data )
File '/home/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/template.py', line 296 in render
return runtime._render(self, self.callable_, args, data)
File '/home/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/runtime.py', line 660 in _render
**_kwargs_for_callable(callable_, data))
File '/home/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/runtime.py', line 692 in _render_context
_exec_template(inherit, lclcontext, args=args, kwargs=kwargs)
File '/home/galaxy/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/runtime.py', line 718 in _exec_template
callable_(context, *args, **kwargs)
File '/home/galaxy/galaxy-dist/database/compiled_templates/base.mako.py', line 42 in render_body
__M_writer(unicode(next.body()))
File '/home/galaxy/galaxy-dist/database/compiled_templates/admin/tool_shed_repository/reselect_tool_panel_section.mako.py', line 76 in render_body
__M_writer(unicode(render_tool_dependency_section( install_tool_dependencies_check_box, [ repo_info_dict ] )))
File '/home/galaxy/galaxy-dist/database/compiled_templates/admin/tool_shed_repository/common.mako.py', line 204 in render_render_tool_dependency_section
changeset_revision )
File '/usr/lib64/python2.6/posixpath.py', line 67 in join
elif path == '' or path.endswith('/'):

AttributeError: 'NoneType' object has no attribute 'endswith'

here is the info from the paster.log

129.XX.XX.XX - - [14/Sep/2012:11:42:50 -0700] "GET / HTTP/1.1" 200 - "-" "Mozilla/5.0 (Windows NT 6.1; WOW64) AppleWebKit/537.1 (KHTML, like Gecko) Chrome/21.0.1180.89 Safari/537.1"
129.XX.XX.XX - - [14/Sep/2012:11:42:51 -0700] "GET /root/tool_menu HTTP/1.1" 200 - "http://129.XX.XX.XX:8888/" "Mozilla/5.0 (Windows NT 6.1; WOW64) AppleWebKit/537.1 (KHTML, like Gecko) Chrome/21.0.1180.89 Safari/537.1"
129.XX.XX.XX - - [14/Sep/2012:11:42:51 -0700] "GET /history HTTP/1.1" 200 - "http://129.XX.XX.XX:8888/" "Mozilla/5.0 (Windows NT 6.1; WOW64) AppleWebKit/537.1 (KHTML, like Gecko) Chrome/21.0.1180.89 Safari/537.1"
129.XX.XX.XX - - [14/Sep/2012:11:42:53 -0700] "POST /root/user_get_usage HTTP/1.1" 200 - "http://129.XX.XX.XX:8888/history" "Mozilla/5.0 (Windows NT 6.1; WOW64) AppleWebKit/537.1 (KHTML, like Gecko) Chrome/21.0.1180.89 Safari/537.1"
129.XX.XX.XX - - [14/Sep/2012:11:42:58 -0700] "GET /admin HTTP/1.1" 200 - "http://129.XX.XX.XX:8888/" "Mozilla/5.0 (Windows NT 6.1; WOW64) AppleWebKit/537.1 (KHTML, like Gecko) Chrome/21.0.1180.89 Safari/537.1"
129.XX.XX.XX - - [14/Sep/2012:11:42:59 -0700] "GET /admin/center?status=done&message=&webapp=galaxy HTTP/1.1" 200 - "http://129.XX.XX.XX:8888/admin" "Mozilla/5.0 (Windows NT 6.1; WOW64) AppleWebKit/537.1 (KHTML, like Gecko) Chrome/21.0.1180.89 Safari/537.1"
129.XX.XX.XX - - [14/Sep/2012:11:43:02 -0700] "GET /admin_toolshed/browse_repositories HTTP/1.1" 200 - "http://129.XX.XX.XX:8888/admin" "Mozilla/5.0 (Windows NT 6.1; WOW64) AppleWebKit/537.1 (KHTML, like Gecko) Chrome/21.0.1180.89 Safari/537.1"
129.XX.XX.XX - - [14/Sep/2012:11:43:05 -0700] "GET /admin_toolshed/browse_repositories?f-deleted=True&sort=name&show_item_checkboxes=false&async=false&page=1& HTTP/1.1" 200 - "http://129.XX.XX.XX:8888/admin_toolshed/browse_repositories" "Mozilla/5.0 (Windows NT 6.1; WOW64) AppleWebKit/537.1 (KHTML, like Gecko) Chrome/21.0.1180.89 Safari/537.1"
129.XX.XX.XX - - [14/Sep/2012:11:43:07 -0700] "GET /admin_toolshed/browse_repositories?f-deleted=True&sort=name&show_item_checkboxes=false&async=false&page=1&webapp=galaxy&operation=manage_repository&id=f2db41e1fa331b3e& HTTP/1.1" 200 - "http://129.XX.XX.XX:8888/admin_toolshed/browse_repositories?f-deleted=True&sort=name&show_item_checkboxes=false&async=false&page=1&" "Mozilla/5.0 (Windows NT 6.1; WOW64) AppleWebKit/537.1 (KHTML, like Gecko) Chrome/21.0.1180.89 Safari/537.1"
129.XX.XX.XX - - [14/Sep/2012:11:43:21 -0700] "GET /admin_toolshed/manage_tool_dependencies?id=f2db41e1fa331b3e HTTP/1.1" 200 - "http://129.XX.XX.XX:8888/admin_toolshed/browse_repositories?f-deleted=True&sort=name&show_item_checkboxes=false&async=false&page=1&webapp=galaxy&operation=manage_repository&id=f2db41e1fa331b3e&" "Mozilla/5.0 (Windows NT 6.1; WOW64) AppleWebKit/537.1 (KHTML, like Gecko) Chrome/21.0.1180.89 Safari/537.1"
129.XX.XX.XX - - [14/Sep/2012:11:43:25 -0700] "POST /admin_toolshed/tool_dependency_status_updates HTTP/1.1" 200 - "http://129.XX.XX.XX:8888/admin_toolshed/manage_tool_dependencies?id=f2db41e1fa331b3e" "Mozilla/5.0 (Windows NT 6.1; WOW64) AppleWebKit/537.1 (KHTML, like Gecko) Chrome/21.0.1180.89 Safari/537.1"
129.XX.XX.XX - - [14/Sep/2012:11:43:28 -0700] "POST /admin_toolshed/tool_dependency_status_updates HTTP/1.1" 200 - "http://129.XX.XX.XX:8888/admin_toolshed/manage_tool_dependencies?id=f2db41e1fa331b3e" "Mozilla/5.0 (Windows NT 6.1; WOW64) AppleWebKit/537.1 (KHTML, like Gecko) Chrome/21.0.1180.89 Safari/537.1"
129.XX.XX.XX - - [14/Sep/2012:11:43:31 -0700] "POST /admin_toolshed/tool_dependency_status_updates HTTP/1.1" 200 - "http://129.XX.XX.XX:8888/admin_toolshed/manage_tool_dependencies?id=f2db41e1fa331b3e" "Mozilla/5.0 (Windows NT 6.1; WOW64) AppleWebKit/537.1 (KHTML, like Gecko) Chrome/21.0.1180.89 Safari/537.1"
129.XX.XX.XX - - [14/Sep/2012:11:43:31 -0700] "GET /admin_toolshed/manage_tool_dependencies?sort=-create_time&show_item_checkboxes=false&async=false&page=1&webapp=galaxy&operation=install&id=f2db41e1fa331b3e& HTTP/1.1" 500 - "http://129.XX.XX.XX:8888/admin_toolshed/manage_tool_dependencies?id=f2db41e1fa331b3e" "Mozilla/5.0 (Windows NT 6.1; WOW64) AppleWebKit/537.1 (KHTML, like Gecko) Chrome/21.0.1180.89 Safari/537.1"
Debug at: http://129.XX.XX.XX:8888/_debug/view/1347593185
129.XX.XX.XX - - [14/Sep/2012:11:43:38 -0700] "GET /admin_toolshed/browse_repositories HTTP/1.1" 200 - "http://129.XX.XX.XX:8888/admin" "Mozilla/5.0 (Windows NT 6.1; WOW64) AppleWebKit/537.1 (KHTML, like Gecko) Chrome/21.0.1180.89 Safari/537.1"
129.XX.XX.XX - - [14/Sep/2012:11:43:44 -0700] "GET /admin_toolshed/browse_repositories?f-deleted=True&sort=name&show_item_checkboxes=false&async=false&page=1& HTTP/1.1" 200 - "http://129.XX.XX.XX:8888/admin_toolshed/browse_repositories" "Mozilla/5.0 (Windows NT 6.1; WOW64) AppleWebKit/537.1 (KHTML, like Gecko) Chrome/21.0.1180.89 Safari/537.1"
129.XX.XX.XX - - [14/Sep/2012:11:43:48 -0700] "GET /admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=f2db41e1fa331b3e HTTP/1.1" 500 - "http://129.XX.XX.XX:8888/admin_toolshed/browse_repositories?f-deleted=True&sort=name&show_item_checkboxes=false&async=false&page=1&" "Mozilla/5.0 (Windows NT 6.1; WOW64) AppleWebKit/537.1 (KHTML, like Gecko) Chrome/21.0.1180.89 Safari/537.1"
Debug at: http://129.XX.XX.XX:8888/_debug/view/1347593186

On Fri, Sep 14, 2012 at 4:45 AM, Greg Von Kuster <greg@bx.psu.edu> wrote:
> Hi paul,
>
> We'll need enough information from your paster log to determine the problem. If your server threw an exception, you may also have a stack trace in your browser window and we'll need that infomration as well.
>
> Thanks,
>
> Greg Von Kuster
>
> On Sep 13, 2012, at 10:38 PM, Paul Tanger wrote:
>
>> So I successfully added the emboss tools to galaxy, but I failed to
>> create a tool panel section for them.
>> So I thought I would uninstall them and install them again, this time
>> creating a tool panel section.
>> I'm following the instructions here (
>> http://wiki.g2.bx.psu.edu/Tool%20Shed#Deactivating_and_uninstalling_tool_shed_repositories_installed_into_a_local_Galaxy_instance
>> ), but I'm getting this error when trying to reinstall the tool
>> repository:
>>
>> AttributeError: 'NoneType' object has no attribute 'endswith'
>>
>> Any ideas what I should do to get this reinstalled?
>>
>> Thanks!
>> ___________________________________________________________
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>

--