From: galaxy-dev-bounces@lists.bx.psu.edu [mailto:galaxy-dev-bounces@lists.bx.psu.edu] On Behalf Of Marc Logghe
Sent: Friday, August 03, 2012 9:22 AM
To: galaxy-dev@lists.bx.psu.edu
Subject: [galaxy-dev] genbank data type

 

Hi all,

The last few days I have been experimenting with a local Galaxy installation.

Via the tool shed, emboss and emboss_datatypes were installed.  Next, a custom tool was added for which a rich sequence is needed as input.

I was hoping to achieve this as such:

<param name="input" type="data" format="genbank" label="Annotated sequences"/>

 

As a test, a genbank was created using EMBOSS’s newseq and output format genbank was chosen (the history indicates the format is ‘genbank’, so that’s fine).

However, it seems not to be recognized as valid input for our custom tool. Guess I’m overlooking something obvious ?

Regards,

Marc

 

Mmm, issue disappeared by itself. Love these kind of issues ;-)

Cheers,

Marc

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