Hi everybody,
I'm currently trying to create a wrapper for one of my program.
This program generates several output file and the name of each
output file is derived from the name of the main input file.
In the .xml file I try to get my output files with the following
tag:
<outputs>
<data from_work_dir="${input_file}.out" label="${input_file}
main output" format="txt" />
...
</outputs>
The corresponding input file tag:
<param name="input_file" type="data" label="Input label"
format="alr" help="Requested file type: ALR" />
The problem is that the content of the "from_work_dir" attribute is
not interpreted by galaxy (Contrary to the label attribute) and
therefore I get this error message:
galaxy.jobs DEBUG 2011-11-28 17:44:24,431
finish(): Could not move
/home/galaxy/galaxy-dist/database/job_working_directory/326/${input_file}.out
to /home/galaxy/galaxy-dist/database/files/000/dataset_684.dat
as directed by from_work_dir
Do I made a syntax error ? Do I misunderstand the function
of the from_work_dir attribute ?
Thank you in advance for your help.
Best regards,
Aurélien Bernard