Hi, with the new ToolShed inplace, and support for cloning/pulling tools directly: What's the recommend way to organize the repositories ? For example, I want to use Peter's Venn tool: hg clone http://toolshed.g2.bx.psu.edu/repos/peterjc/venn_list If I clone, I get the following folder hierarchy: venn_list -> tools -> plotting -> xml/py . So I can't directly clone into the <galaxy>/tools folder. Even if I could (somehow skipping the "venn_list" directory), cloning multiple tools would override the ".hg" folder of each other. so is it still a manual process of cloning to a temporary directory, then manually copy the files to the <galaxy>/tools folder ? or am I missing something ? being able to automagically "pull -u" tools from the toolshed would be really cool. thanks, -gordon