... which brings us back to a past suggestion from one of my colleagues (you can implement his patch in your instance): http://lists.bx.psu.edu/pipermail/galaxy-dev/2011-September/006827.html Cheers, Roman On 2011-11-17 16:19, Nate Coraor wrote:
On Nov 16, 2011, at 4:12 PM, Chorny, Ilya wrote:
The uploaded files need grooming, so change your Copy data into Galaxy? selection to be Copy files into Galaxy instead of Link to files without copying into Galaxy so grooming can be performed.
BAMs in Galaxy must be sorted. Since the "link to…" option can't modify the source file, the BAM can't be "uploaded" unless it's sorted prior to uploading.
--nate
Thoughts?
Thanks,
Ilya
Ilya Chorny Ph.D. Bioinformatics Scientist I Illumina, Inc. 9885 Towne Centre Drive San Diego, CA 92121 Work: 858.202.4582 Email: ichorny@illumina.com Website: www.illumina.com
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