Prakash: not unless your default pull is* galaxy-central* repository. M. On Fri, Jan 3, 2014 at 11:49 AM, Velayutham, Prakash (Prakash) < Prakash.Velayutham@cchmc.org> wrote:
Hi Nate,
If I do a "hg clone" of my default pull, this should already be there?
Thanks, Prakash
On Jan 3, 2014, at 11:45 AM, Nate Coraor <nate@bx.psu.edu> wrote:
Hi Prakash,
This was not previously possible, but I have added a config option for it:
https://bitbucket.org/galaxy/galaxy-central/commits/e92e13e9c103cc1f36dff65e...
If you're running the stable branch, you can apply the changes from this commit manually.
--nate
On Thu, Jan 2, 2014 at 11:09 AM, Jennifer Jackson <jen@bx.psu.edu> wrote:
Hello Prakash, I am going to move this over to the galaxy-dev@bx.psu.edu mailing list where it will have greater visibility within our development community. Best, Jen Galaxy team https://wiki.galaxyproject.org/MailingLists#The_lists
On 1/2/14 7:27 AM, Velayutham, Prakash (Prakash) wrote:
Hi,
We have a SSO environment provided by Oracle Fusion products and for some reason, they don't like to send over HTTP_REMOTE_USER as a header variable to downstream servers. I have seen it before with other web sites I have integrated with Oracle Access Manager. Is there a way Galaxy can accept another HEADER variable than REMOTE_USER for its external authentication?
As an extension:
- With just enabling HTTP_REMOTE_USER as a header variable from an external authenticator, Galaxy works without any issues. I tried this with a default Apache/mod_ldap/mod_authnz_ldap setup. - However, when I mix the Oracle gateways into the mix, things break down. - I made OAM send HTTP_AUTH_USER over to Galaxy. - I changed all instances of REMOTE_USER to AUTH_USER in the installed location of Galaxy in my server. - Authentication works fine, but I get issues with HISTORY part of Galaxy (below), when I access a workflow or basically any part of Galaxy that depends on HISTORY
Error Traceback: View as: Interactive<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> | Text<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> | XML<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> (full)<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> ⇝ AttributeError: 'NoneType' object has no attribute 'user' URL: http://xxx.xxx.xxx/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False Module weberror.evalexception.middleware:*364* in respond <Mail Attachment.jpeg> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> view<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> app_iter *=* self*.*application*(*environ*,* detect_start_response*)* Module paste.recursive:*84* in __call__ <Mail Attachment.jpeg> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> view<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> *return* self*.*application*(*environ*,* start_response*)* Module galaxy.web.framework.middleware.remoteuser:*91* in __call__ <Mail Attachment.jpeg> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> view<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> *return* self*.*app*(* environ*,* start_response *)* Module paste.httpexceptions:*633* in __call__ <Mail Attachment.jpeg> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> view<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> *return* self*.*application*(*environ*,* start_response*)* Module galaxy.web.framework.base:*132* in __call__ <Mail Attachment.jpeg> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> view<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> *return* self*.*handle_request*(* environ*,* start_response *)* Module galaxy.web.framework.base:*190* in handle_request <Mail Attachment.jpeg> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> view<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> body *=* method*(* trans*,* ****kwargs *)* Module galaxy.web.framework:*98* in decorator <Mail Attachment.jpeg> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> view<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> *return* func*(* self*,* trans*,* ***args*,* ****kwargs *)* Module galaxy.webapps.galaxy.controllers.dataset:*555* in list <Mail Attachment.jpeg> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> view<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#>
<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> status*,* message *=* self*.*_copy_datasets*(* trans*,* hda_ids*,* target_histories *)* Module galaxy.webapps.galaxy.controllers.dataset:*1127* in _copy_datasets <Mail Attachment.jpeg> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> view<https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> <https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-name=All&f-tags=All&f-deleted=False#> *if* user *!=* history*.*user*:* *AttributeError: 'NoneType' object has no attribute 'user'*
Thanks, Prakash
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___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/