Thanks Anne, I'll make sure this fix makes it into my next commit to Galaxy central. Greg On Jun 20, 2012, at 11:42 AM, Anne Pajon wrote:
Dear,
I've been running unit tests on the latest galaxy-central 7294:663e03e40c86 that have me this error:
[localhost] out: ====================================================================== [localhost] out: ERROR: Failure: ImportError (cannot import name install_manager) [localhost] out: ---------------------------------------------------------------------- [localhost] out: Traceback (most recent call last): [localhost] out: File "/Users/pajon01/galaxy-test/galaxy-central/eggs/nose-0.11.1-py2.7.egg/nose/loader.py", line 379, in loadTestsFromName [localhost] out: addr.filename, addr.module) [localhost] out: File "/Users/pajon01/galaxy-test/galaxy-central/eggs/nose-0.11.1-py2.7.egg/nose/importer.py", line 39, in importFromPath [localhost] out: return self.importFromDir(dir_path, fqname) [localhost] out: File "/Users/pajon01/galaxy-test/galaxy-central/eggs/nose-0.11.1-py2.7.egg/nose/importer.py", line 86, in importFromDir [localhost] out: mod = load_module(part_fqname, fh, filename, desc) [localhost] out: File "/Users/pajon01/galaxy-test/galaxy-central/lib/galaxy/tool_shed/install_manager.py", line 10, in <module> [localhost] out: from galaxy.tool_shed.migrate.common import * [localhost] out: File "/Users/pajon01/galaxy-test/galaxy-central/lib/galaxy/tool_shed/migrate/common.py", line 9, in <module> [localhost] out: from galaxy.tool_shed import install_manager [localhost] out: ImportError: cannot import name install_manager
[localhost] out: ----------------------------------------------------------------------
I fixed it by commenting out the circular import in tool_shed/install_manager.py
hg diff diff -r 663e03e40c86 lib/galaxy/tool_shed/install_manager.py --- a/lib/galaxy/tool_shed/install_manager.py Wed Jun 20 03:39:05 2012 -0400 +++ b/lib/galaxy/tool_shed/install_manager.py Wed Jun 20 16:37:06 2012 +0100 @@ -7,7 +7,7 @@ from galaxy.util.json import from_json_string, to_json_string from galaxy.util.shed_util import * from galaxy.util.odict import odict -from galaxy.tool_shed.migrate.common import * +#from galaxy.tool_shed.migrate.common import *
Hope it would be useful to someone else. Kind regards, Anne. -- Anne Pajon, Ph.D. Cancer Research UK - Cambridge Research Institute Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE anne.pajon@cancer.org.uk | +44 (0)1223 404 334
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