Hello everyone,<br><br>I am comparing two samples (control and treated) paired end RNA Seq data. In the cuffdiff output I have noticed that few genes have zero FPKM value in one sample and other sample has significant FPKM value. <br>
I want to identify uniquely expressed genes identified only in one sample (either control or treated). <br><br>My question: If something is measured with significance in one 
sample (high FPKM), but not measured at all in another sample (Zero FPKM), should I consider that gene as significant?<br><br>Can anyone explain this.<br><br>Thanks<br><br>suz<br><br><br><br><br>