Hi Keith, sounds good! Out of interest why did it not work? How does your notebook look like? Looking forward to June! :) Cheers, Bjoern
Hi Björn,
Your suggestion did not work, or at least I couldn’t get it to work. However, it seems the easiest solution is to simply provide my own default_notebook.ipynb file that uses my kernel when building the Docker image.
I should have something stable, and not too embarrassing, to share with the world in early June.
Cheers, Keith
On May 9, 2016, at 2:19 AM, Björn Grüning <bjoern.gruening@gmail.com> wrote:
Hi Keith,
please try this:
c.MappingKernelManager.default_kernel_name = 'your_kerne_name...maybe_groovy'
in ipython_notebook_config.py
completely untested. I would be happy to include the groovy stuff in the main image :)
Thanks, Bjoern
Am 09.05.2016 um 01:20 schrieb Suderman Keith:
How do I make my custom kernel the default when starting a Jupyter interactive environment?
I have written a native Jupyter kernel for Groovy, that is, a Jupyter kernel written in Groovy that listens to, and responds on, the appropriate ZMQ sockets. I have also extended the bgruening/docker-jupyter-notebook docker image to add my kernel and modified the jupyter.ini file to use my Docker image.
This all works.
I can launch a Jupyter Notebook (or use 'jupyter console --kernel groovy' from the command line) and interact with Galaxy. I can launch an interactive Jupyter environment in Galaxy and select 'Kernels -> Change kernel -> Groovy' and all of the above works fine; I just want my kernel to be the default.
------------------------------ Research Associate Department of Computer Science Vassar College Poughkeepsie, NY
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------------------------------ Research Associate Department of Computer Science Vassar College Poughkeepsie, NY