When I run CloudMap EMS Variant Density Mapping workflow (takes VCF of heterozygous and homozygous variants to subtract) (imported from
uploaded file) on local Galaxy instance, I got this
, when I wanted to edit the workflow. Also, I got this
The following tools are beinge executed with a different version from
what was available when this workflow was last saved because the previous version is no longer available for use on this galaxy instance. To upgrade your workflow and dismiss this message simply edit the workflow and re-save it to update the stored tool version.
- toolshed.g2.bx.psu.edu/repos/devteam/sam_to_bam/sam_to_bam/1.1.2: using version '1.1.2' instead of version '1.1.3' indicated in this workflow.
- ,when I wanted to run the workflow.
I know it is the problem with version of SAM-to-BAM. But, when I searched the Tool sheds > Search and browse tool sheds, there is only version
1.1.4 for SAM-to-BAM. When I tried to edit the workflow from Workflow > ...> Edit, I did not find where could I change the version of SAM-to-BAM. When I clicked on SAM-to-BAM on the Workflow Canvas, it showed the version is 1.1.3 for it.
Could you tell me which version do I need exactly, and how to figure out this?
Thanks a lot!
Best,
Xiaofei