I found a couple of issues in using the latest version of Cloudman (revision:10201:ebe87051fadf").

The "Extract Genomic DNA" tool returns an error: 

"No sequences are available for 'mm9', request them by reporting this error."

Upon trying to report the error in Galaxy (on the page that comes up when you click the bug icon) I get the error:

"Mail is not configured for this galaxy instance"

Any help on fixing the "Extract Genomic DNA" tool would be great. Thanks.