Dear Devs

We have a locally developed tool which takes in a collection of Fastq pairs and produces a number of outputs which includes a number of HTML files.

For relatively small numbers of input files all the HTML outputs can be viewed without issue in Galaxy. However we've observed that for large collections of Fastqs, the size of one of the HTML files can be very large (several megabytes) and by default attempting to view these in Galaxy results in the "This dataset is large and only the first megabyte is shown below" message, followed by the initial HTML markup rendered as text.

As clicking on the "show all" link renders the entire HTML file correctly, is there a way to force Galaxy to shortcut the truncation for HTML (or at least apply a larger limit for determining when files are too large to be shown all at once)?

We're currently using 17.05 in our production instance.

Thanks for advance for any help or suggestions,

Best wishes

Peter


--
Peter Briggs peter.briggs@manchester.ac.uk
Bioinformatics Core Facility University of Manchester
B.1083 Michael Smith Bldg Tel: (0161) 2751482

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