On Wed, Oct 2, 2013 at 2:48 PM, Björn Grüning <bjoern.gruening@pharmazie.uni-freiburg.de> wrote:

Hi Peter,

we can confirm. Latest Galaxy stable version and its occurring randomly.
I was not able to reproduce it by myself.

Cheers,
Bjoern

> Hi all,
>
> Multiple users of our internal Galaxy server have reported with
> multiple browsers that tabular data is not displayed in the main
> central panel. The preview in the history works, but clicking on
> the "eye" icon gives a blank page.
>
> I can confirm this in Firefox 24.0 and Safari 6.0.5, the HTML
> for the central frame looks blank but is actually a script when
> viewed via the frame source. The tabular file data is there in
> the script's first_data_chunk entry - but does not get shown.
> An except is shown below.
>
> Has anyone else noticed this problem? I believe it began
> when I last updated this Galaxy instance, but was not
> noticed immediately.
>
> Thanks,
>
> Peter
>
> -----------------------
>
> I believe we are running the current stable release, or at least
> the latest commit on the default branch from galaxy-dist
>
> $ hg pull
> warning: bitbucket.org certificate with fingerprint
> 24:9c:45:8b:9c:aa:ba:55:4e:01:6d:58:ff:e4:28:7d:2a:14:ae:3b not
> verified (check hostfingerprints or web.cacerts config setting)
> real URL is https://bitbucket.org/galaxy/galaxy-dist
> pulling from http://bitbucket.org/galaxy/galaxy-dist
> searching for changes
> no changes found
>
> $ hg update
> 0 files updated, 0 files merged, 0 files removed, 0 files unresolved
>
> $ hg branch
> default
>
> [galaxy@ppserver galaxy-dist]$ hg log -b default | head
> changeset: 10411:c42567f43aa7
> user: greg
> date: Mon Aug 19 13:19:56 2013 -0400
> summary: Filter invalid objects when generating the list of
> repository_dependencies objects that are associated with a tool shed
> repository installed into Galaxy.
>
> changeset: 10410:e9ee9c5d30ae
> user: Dave Bouvier <dave@bx.psu.edu>
> date: Mon Aug 19 13:08:45 2013 -0400
> summary: Remove duplicate method from the install and test's
> functional_tests.py.
> ...
>
>
> -----------------------
>
> <!DOCTYPE HTML>
> <html>
> 
> <head>
> <title>Dataset Display</title>
> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
>
> <link href="/galaxy/static/style/base.css?v=1380731103"
> media="screen" rel="Stylesheet" type="text/css" />
>
> <script src="/galaxy/static/scripts/libs/jquery/jquery.js?v=1380731103"
> type="text/javascript"></script>
> <script src="/galaxy/static/scripts/libs/jquery/jquery.migrate.js?v=1380731103"
> type="text/javascript"></script>
> <script src="/galaxy/static/scripts/libs/jquery/select2.js?v=1380731103"
> type="text/javascript"></script>
> <script src="/galaxy/static/scripts/libs/bootstrap.js?v=1380731103"
> type="text/javascript"></script>
> <script src="/galaxy/static/scripts/libs/underscore.js?v=1380731103"
> type="text/javascript"></script>
> <script src="/galaxy/static/scripts/libs/backbone/backbone.js?v=1380731103"
> type="text/javascript"></script>
> <script src="/galaxy/static/scripts/libs/backbone/backbone-relational.js?v=1380731103"
> type="text/javascript"></script>
> <script src="/galaxy/static/scripts/libs/handlebars.runtime.js?v=1380731103"
> type="text/javascript"></script>
> <script src="/galaxy/static/scripts/galaxy.base.js?v=1380731103"
> type="text/javascript"></script>
>
> <script src="/galaxy/static/scripts/templates/compiled/template-popupmenu-menu.js?v=1380731103"
> type="text/javascript"></script>
>
> <script src="/galaxy/static/scripts/mvc/ui.js?v=1380731103"
> type="text/javascript"></script>
>
> <script type="text/javascript">
> // console protection
> window.console = window.console || {
> log : function(){},
> debug : function(){},
> info : function(){},
> warn : function(){},
> error : function(){},
> assert : function(){}
> };
>
> // Set up needed paths.
> var galaxy_paths = new GalaxyPaths({
> root_path: '/galaxy/',
> image_path: '/galaxy/static/images'
> });
> </script>
>
>
>
> <script src="/galaxy/static/scripts/libs/require.js?v=1380731103"
> type="text/javascript"></script>
> <script src="/galaxy/static/scripts/templates/compiled/helpers-common-templates.js?v=1380731103"
> type="text/javascript"></script>
>
> <script type="text/javascript">
> require.config({
> baseUrl: "/galaxy/static/scripts",
> shim: {
> "libs/backbone/backbone": { exports: "Backbone" },
> "libs/backbone/backbone-relational": ["libs/backbone/backbone"]
> }
> });
>
> require(['mvc/data'], function(data) {
> data.createTabularDatasetChunkedView(
> _.extend( {"misc_blurb": "7,891 lines", "peek":
> "<table cellspacing=\"0\"
> cellpadding=\"3\"><tr><th>1</th><th>2</th><th>3</th></tr><tr><td>Gpa_EST_02_04___C05_022</td><td>GO:0005737</td><td>...</td></tr></table>",
> "data_type": "tabular", "deleted": false, "history_id":
> "cdbf837ba6516a14", "metadata_column_names": null, "visible": true,
> "genome_build": "?", "hid": 10, "file_size": 509095,
> "metadata_data_lines": 7891, "file_ext": "tabular", "id":
> "0ddcd2cf2375e24a", "misc_info": "\nBLASTX output identified\nInput
> has 4507 queries\nDone\nStandard out:\nBlast2GO Pipeline Version
> 2.5.0\n--------------------------------------\n\nHash for resource
> ec2go_19072011.txt of type ec created. 4003 associations
> loaded.\nBlast2GO build: 23092011\nChange ", "hda_ldda": "hda",
> "name": "Blast2GO Local database (May 2011)", "metadata_columns": 3,
> "uuid": null, "state": "ok", "metadata_comment_lines": null,
> "model_class": "HistoryDatasetAssociation", "metadata_dbkey": "?",
> "purged": false, "metadata_column_types": ["str", "str", "str"]},
> {
> url_viz: "/galaxy/visualization",
> chunk_url:
> "/galaxy/dataset/display?dataset_id=0ddcd2cf2375e24a",
> first_data_chunk: {"ck_index": 1,
> "ck_data": "Gpa_EST_02_04___C05_022\tGO:0005737\tn-dimethylarginine
> dimethylaminohydrolase\n...\n"}
> }
> ),
> // Append view to body.
> $('body')
> );
> });
> </script>
>
> </head>
> <body>
>
> </body>
> </html>
>
> --
> ___________________________________________________________
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