Hi Nate,

I'm running

changeset:   12641:cab3db6e1d59

and I can see the same behaviour. The blast job is not listed under jobs in the admin section and I can't kill it, also not via deleting the dataset.

Anything I can do to track that down?
In my case it's a large blast job with splitting enabled.

Cheers,
Bjoern

Hi all,

There was a regression introduced in the most recent stable release that
was preventing jobs from being stopped, fixed here:


https://bitbucket.org/galaxy/galaxy-central/commits/1298d3f6aca59825d0eb3d32afd5686c4b1b9294?at=stable

You can pull from the stable branch of galaxy-central to get that
changeset. If that doesn't resolve the problem, it sounds like it may be
due to the crashing handlers, so we would need to figure out the cause of
those crashes.

--nate


On Sat, Feb 22, 2014 at 12:24 PM, Björn Grüning
<bjoern.gruening@gmail.com>wrote:

Hi,

I have one running at the moment, that job is also not listed in the jobs
monitor under the admin-panel.

Cheers,
Bjoern


  On Tue, Feb 18, 2014 at 2:20 PM, Federico Zambelli

<federico.zambelli@unimi.it> wrote:

Hi,

something strange happens with Cufflinks in our Galaxy server. When a
user
deletes a running Cufflinks job in fact the associated Cufflinks
process(es)
are not terminated. Apart from unneccessary CPU usage, this prevents
other
jobs from starting if the max jobs limit has been already reached by the
user.

This happens only with Cufflinks, Cuffcompare for comparison behaves just
fine.

Best,
F.

What cluster system are you using? Can you try a few other long
running tools for comparison?

I've been meaning to double check if this still happens, but I had seen
this for BLAST+ jobs under SGE (noticeable again when large zombie
jobs are blocking the queue).

Peter
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