See also: https://galaxyproject.github.io/training-material/topics/admin/tutorials/mon... Cheers, Nicola On 27/04/18 15:05, Hans-Rudolf Hotz wrote:
Hi Christopher
It depends on the setting of "cleanup_job" ('always', 'onsuccess', 'never'), whether the temporary files are cleaned up or not. Though, to be honest, I don't know, if this setting as any influence, when you 'delete' a job.
For the quotas, only dataset in the histories are counted
The temporary files are very handy for debugging, so I have 'onsuccess' on our production server and 'never' on our development server. I just regularly check the total size of the working directories and do the clean up manually
Regards, Hans-Rudolf
On 04/27/2018 01:51 PM, Previti wrote:
Hi everybody,
I have a hopefully basic questions regarding temporary output files.
A user was generating >4TB output files via the program bedtools intersectbed. The jobs were cancelled, but I still see the (temporary) output files that were generated.
Does Galaxy clean these up? Does it do this regularly?
Would a quota prevent something like this from happening again or would the jobs have to finish before being "counted"?
Thanks and best regards,
Christopher
-- *Dr. Christopher Previti* Genomics and Proteomics Core Facility High Throughput Sequencing (W190) Bioinformatician
German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 580 69120 Heidelberg Germany Room: B2.102 (INF580/TP3) Phone: +49 6221 42-4661
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