Hi Peter v H, Which version of Galaxy are you running? Which version of ncbi_blast_tools are you running? (ideally down to the ToolShed revision) My guess is that since this used to be .extra_files_path perhaps your Galaxy is too old for .files_path to work? https://github.com/peterjc/galaxy_blast/commit/2bbbf7f361ada20bf1b5bd777fae6... Thanks, Peter C. On Tue, Jul 21, 2015 at 3:08 PM, Peter van Heusden <pvh@sanbi.ac.za> wrote:
Hi there
I'm trying to use the blastp tools from the ncbi_blast_tools, but every time I try and run a job I get the following error:
Traceback (most recent call last): File "/net/datasrv3hs.sanbi.ac.za/cip0/software/galaxy/galaxysrv/galaxy/lib/galaxy/jobs/runners/__init__.py", line 163, in prepare_job job_wrapper.prepare() File "/net/datasrv3hs.sanbi.ac.za/cip0/software/galaxy/galaxysrv/galaxy/lib/galaxy/jobs/__init__.py", line 859, in prepare self.command_line, self.extra_filenames, self.environment_variables = tool_evaluator.build() File "/net/datasrv3hs.sanbi.ac.za/cip0/software/galaxy/galaxysrv/galaxy/lib/galaxy/tools/evaluation.py", line 422, in build raise e NotFound: cannot find 'files_path' while searching for 'db_opts.histdb.files_path'
This is happening when expanding the tool template. The BLAST db in in the history (thus the reference to histdb) but why can it not find this attribute?
Peter
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