Re: [galaxy-dev] KeyError: 'tool_panel_section' when installing a new tool

19 Oct 2016

      On 10/19/2016 03:23 PM, Martin Čech wrote:
...
Hi Pierre,
how old is your Tool Shed? When was the last time a tool installation 
from it succeeded?
Hi martin,

here is the log from the toolshed :

    commit 73f46f4e08141f78927056fa3e4709d0ab323972
    Merge: 05e6682 27dc31a
    Author: Nicola Soranzo
    Date:   Wed Nov 18 10:06:53 2015 +0000

I was able to install my tool from this toolshed a few minutes ago.
The second attempt failed.

Thanks for the helps,

Pierre
...
thanks
M.
On Wed, Oct 19, 2016 at 9:20 AM Pierre Lindenbaum 
<pierre.lindenbaum@univ-nantes.fr 
<mailto:pierre.lindenbaum@univ-nantes.fr>> wrote:
Hi all, I got a "Internal Server Error" ==> "KeyError:
    'tool_panel_section' " when I'm trying to install a new tool from our
    toolshed (see stacktrace below).
My galaxy instance was cloned from
commit 217854827ac7dfc88c5388cd2ecb24fffd86c060
            Merge: 056a7e0 ad0d0bc
            Author: Björn Grüning <bjoern@gruenings.eu
    <mailto:bjoern@gruenings.eu>>
            Date:   Mon Oct 10 10:23:37 2016 +0200
with only a few minor(?) (admin...) modifications under config/*
    This error was raised when I've removed + re-installed a tool from the
    toolshed.
How can I fix this ?
Thanks
Pierre
127.0.0.1 - - [19/Oct/2016:15:15:44 +0200] "POST
    /admin_toolshed/prepare_for_install HTTP/1.1" 500 -
    "http://127.0.0.1:8080/admin_toolshed/prepare_for_install?changeset_revisions=a38c6719c9c3&repository_ids=9b8af19fb3feae8b&tool_shed_url=http%3A%2F%2Fmasked.host.fr%2Ftoolshed%2F"
    "Mozilla/5.0 (X11; Ubuntu; Linux i686; rv:49.0) Gecko/20100101
    Firefox/49.0"
    Error - <type 'exceptions.KeyError'>: 'tool_panel_section'
    URL: http://127.0.0.1:8080/admin_toolshed/prepare_for_install
    File
    '/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/galaxy/web/framework/middleware/error.py',
    line 151 in __call__
       app_iter = self.application(environ, sr_checker)
    File
    '/home/lindenb/tmp/GALAXY/galaxy.gitlab/.venv/local/lib/python2.7/site-packages/paste/recursive.py',
    line 85 in __call__
       return self.application(environ, start_response)
    File
    '/home/lindenb/tmp/GALAXY/galaxy.gitlab/.venv/local/lib/python2.7/site-packages/paste/httpexceptions.py',
    line 640 in __call__
       return self.application(environ, start_response)
    File
    '/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/galaxy/web/framework/base.py',
    line 135 in __call__
       return self.handle_request( environ, start_response )
    File
    '/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/galaxy/web/framework/base.py',
    line 194 in handle_request
       body = method( trans, **kwargs )
    File
    '/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/galaxy/web/framework/decorators.py',
    line 98 in decorator
       return func( self, trans, *args, **kwargs )
    File
    '/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py',
    line 1080 in prepare_for_install
       install_repository_manager.handle_tool_shed_repositories(
    installation_dict )
    File
    '/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/tool_shed/galaxy_install/install_manager.py',
    line 633 in handle_tool_shed_repositories
       new_tool_panel_section_label=new_tool_panel_section_label )
    File
    '/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py',
    line 198 in create_repository_dependency_objects
     self.app.installed_repository_manager.activate_repository(
    repository_db_record )
    File
    '/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/tool_shed/galaxy_install/installed_repository_manager.py',
    line 94 in activate_repository
       tool_panel_dict = repository.metadata[ 'tool_panel_section' ]
    KeyError: 'tool_panel_section'