You may have done this already, but if not -- can you try editing config/tool_sheds_conf.xml and change the two url entries to https? If this file doesn't exist, create it from the .sample and then make the modifications.-DannonOn Thu Feb 19 2015 at 8:17:32 AM Scott Szakonyi <Scott.B.Szakonyi.1@nd.edu> wrote:Hi Dannon,There are two things I'm seeing, which seem to be independent problems.
- Https/ssl issue with URLs generated in util.py. It seems the detection of Https is not working properly, therefore the links underlying the toolshed functionality are coming up as http rather than https. The browser then refuses to following them because they are "mixed mode". I've gone around this for the moment by hacking the code in util.py, but it's possible (as I'm very new to server administration) that I'm missing some necessary configuration item that I just don't know about.
- Toolshed installation is not working properly when Galaxy is run with multiple processes. New categories are not created, and the installed tool does not show up in user menus until the Galaxy server is restarted. I've worked around this by running the Galaxy server in single process mode while installing tools.
Thanks for the link... I'll look into that and see what I can glean from it.Best regards,ScottOn Wed, Feb 18, 2015 at 7:14 PM, Dannon Baker <dannon.baker@gmail.com> wrote:Hey Scott,
What weird behavior are you seeing? Paste itself isn't going to serve https, though it's definitely possible to configure an upstream proxy to do so. Are you using a setup similar to https://wiki.galaxyproject.org/Admin/Config/nginxProxy#SSL ?-DannonOn Wed Feb 18 2015 at 4:34:51 PM Scott Szakonyi <Scott.B.Szakonyi.1@nd.edu> wrote:___________________________________________________________Hello all,Just curious if anyone has successfully implemented Galaxy with ssl and standalone Paste-based processes. We're attempting to do so, and we're getting some weird behavior, particularly with regards to the Toolshed. Just want to know if it can be done successfully.Thanks!--Scott B. SzakonyiResearch Programmer
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