Hi, I've reported the jobs running out of order issue before. http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-May/014777.html We use mysql database. It seems rather random, but it might be only jobs taking multiple inputs. I'll check that if it happens. I've not found a solution yet. Geert ________________________________________ Van: galaxy-dev-bounces@lists.bx.psu.edu [galaxy-dev-bounces@lists.bx.psu.edu] namens Nikhil Joshi [najoshi@ucdavis.edu] Verzonden: dinsdag 17 september 2013 3:48 Aan: Björn Grüning CC: galaxy-dev@lists.bx.psu.edu Onderwerp: Re: [galaxy-dev] workflow issues in local Galaxy.... I am not using CloudMan, but we do use a sqlite database. It seems to have that behavior when there is an output that connects to two inputs... but I think I need to do more investigating. I suppose we could try postgres and see if that works... - Nik. On Mon, Sep 16, 2013 at 2:04 PM, Björn Grüning <bjoern@gruenings.eu<mailto:bjoern@gruenings.eu>> wrote: Hi Nikhil, do you use the CloudMan? http://wiki.galaxyproject.org/CloudMan I have such a behaviour when I used the sqlite database and not postgresql. Cheers, Bjoern
Hi all,
So we use Galaxy to teach our bioinformatics courses and we have an install of Galaxy in the Amazon cloud that we have customized with various tools. However, we don't touch the Galaxy code base itself. Recently, we've been getting errors in creating and running workflows. We are getting "locked database" errors, sometimes the steps seem to run out of order, and sometimes the entire workflow just hangs. Also, the workflow editor seems to be having issues, like it allows connections between outputs and inputs of entirely different datatypes. Has anyone seen any issues like this?
- Nik.
-- Nikhil Joshi Bioinformatics Analyst/Programmer UC Davis Bioinformatics Core http://bioinformatics.ucdavis.edu/ najoshi -at- ucdavis -dot- edu 530.752.2698<tel:530.752.2698> (w) ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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-- Nikhil Joshi Bioinformatics Analyst/Programmer UC Davis Bioinformatics Core http://bioinformatics.ucdavis.edu/ najoshi -at- ucdavis -dot- edu 530.752.2698 (w)