On Fri, Nov 13, 2015 at 10:40 AM, Olivier CLAUDE <o.claude@outlook.fr> wrote:
Hello,
This is working! For signlaP and promoter at least.
Good.
I still got this weird error with tmhmm ("no output from tmhmm") and I can't figure what's wrong .
The message "no output from tmhmm" is from my wrapper script, https://github.com/peterjc/pico_galaxy/blob/master/tools/protein_analysis/tm... This can be triggered when tmhmm silently fails, e.g. you have just the 32bit binaries on a 64bit system: https://github.com/peterjc/pico_galaxy/commit/e79bc01a6e3ef68d21e0921cd65cd2... Can you run tmhmm successfully outside of Galaxy?
I experienced some problems at the beginning with signal and promoter, because I forgot to remove the path I've made in the .bashrc . They were broken in the /usr/local/bin If anybody experience the problem in the future, just remove the old ones, remove from the path the wrong one, and redo the command line.
Thanks a lot.
Do anybody knows where i can find WolFPSORT? The website semms to be down for a while now and I am not able to find it anywhere?
Thanks again!
Olivier .
Yes, http://wolfpsort.org/ is still down (and has been for some months so this is not a temporary glitch). The best plan would be to try to get in touch with Paul Horton. I will try to email him (and CC you). I do have a copy of WoLF PSORT v0.2 but this is not an open source tool, and redistribution is restricted. Assuming you want it for academic use only (so no commercial part-funding, no industry partnership, etc) than I can probably forward it to you off list. Peter -- WoLF PSORT Package Command Line Version 0.2 License Author: Paul Horton Copyright: All Rights Reserved Created: 2005/9/1 Last Modified: 2005/9/1 LICENSE 1. Academic License If you are an academic you may freely use this package on site or redistribute it for academic use as is. This does not include providing a WoLF PSORT prediction service over the internet. Academic citation would be highly appreciated. Non-profit use is a necessary condition for "academic". If in doubt please contact Paul Horton. 2. Commercial License Any rights not explicitly given in this license are reserved. However, any potential users are encouraged to contact Paul Horton to discuss other licensing arrangements.