Hi!

This might be helpful: http://wiki.g2.bx.psu.edu/Admin/Config/Tool%20Dependencies

Cheers,

Sascha

Recently, I am trying to configure our galaxy on our cluster with PBS submission.
I run galaxy locally very well on the head node, but I met one issue when I tried to configure galaxy on our cluster.
In universe_wsgi.ini file, I added the following entries,
start_job_runners = pbs
default_cluster_job_runner = pbs:///

And then I run the command to generate an egg,
LIBTORQUE_DIR=/usr/lib64/libtorque python scripts/scramble.py -e pbs_python --config=universe_wsgi.ini

Then I run galaxy and submitted two jobs into the PBS queue. I checked the galaxy log and PBS queue and found these two jobs were submitted successfully.
But after a while, galaxy told me that the two jobs were failed.

I suspected I did not modify the galaxy:tool_runners section in the universe_wsgi.ini file. The node machines cannot find the 3rd party tools.

Can anyone give me some advices?

Thanks a lot!